Variant report

Variant	rs2583450
Chromosome Location	chr11:25982137-25982138
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10834852	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10834853	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11029031	0.92[ASN][1000 genomes]
rs11029032	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11029044	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11529818	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16914888	0.82[ASN][1000 genomes]
rs16914903	0.87[ASN][1000 genomes]
rs182757	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1973324	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2349600	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs328463	0.90[AFR][1000 genomes]
rs328472	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73443349	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760599	chr11:25186984-26159450	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1046507	chr11:25469712-26111707	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv832091	chr11:25823826-26009887	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv469948	chr11:25859783-26026233	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1041778	chr11:25898574-26098141	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv897140	chr11:25905509-25991194	Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv467777	chr11:25959082-25985507	Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
8	nsv553898	chr11:25959082-25985507	Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
9	esv3348528	chr11:25964425-25982438	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
10	esv3323937	chr11:25980326-25983124	Bivalent/Poised TSS Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
11	esv3391028	chr11:25980576-25982524	Weak transcription Bivalent/Poised TSS Enhancers	n/a	n/a	inside rSNPs	diseases
12	nsv825798	chr11:25981364-25982166	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:25974400-25989400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:25975800-25982400	Weak transcription	Fetal Kidney	kidney
3	chr11:25979400-25988600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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