Variant report

Variant	rs2583990
Chromosome Location	chr4:90771499-90771500
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10004413	0.97[ASN][1000 genomes]
rs10028246	0.83[ASN][1000 genomes]
rs12331318	0.97[ASN][1000 genomes]
rs1348224	0.82[ASN][1000 genomes]
rs1372518	0.86[EUR][1000 genomes]
rs1372519	0.87[EUR][1000 genomes]
rs1372520	0.87[EUR][1000 genomes]
rs1372521	0.83[ASN][1000 genomes]
rs1822217	0.83[ASN][1000 genomes]
rs2736994	0.82[EUR][1000 genomes]
rs28403500	0.97[ASN][1000 genomes]
rs28415623	0.81[ASN][1000 genomes]
rs28507349	0.83[ASN][1000 genomes]
rs28734152	0.97[ASN][1000 genomes]
rs28777703	0.97[ASN][1000 genomes]
rs35424815	0.97[ASN][1000 genomes]
rs58864428	0.83[ASN][1000 genomes]
rs6532192	0.82[ASN][1000 genomes]
rs6532193	0.82[ASN][1000 genomes]
rs6816736	0.83[ASN][1000 genomes]
rs6817001	0.83[ASN][1000 genomes]
rs6843084	0.83[ASN][1000 genomes]
rs7671549	1.00[ASN][1000 genomes]
rs7672979	0.97[ASN][1000 genomes]
rs7680557	0.82[ASN][1000 genomes]
rs7680761	0.82[ASN][1000 genomes]
rs7687945	0.82[ASN][1000 genomes]
rs7698219	0.97[ASN][1000 genomes]
rs894280	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830400	chr4:90085456-90922432	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1012406	chr4:90167781-91166787	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv949454	chr4:90272120-91156917	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv879536	chr4:90678541-90775212	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:90759600-90771600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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