Variant report

Variant	rs2585096
Chromosome Location	chr15:57375392-57375393
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57373645..57376211-chr15:57382766..57385379,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1652733	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs213154	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2430963	1.00[AMR][1000 genomes]
rs2431022	1.00[YRI][hapmap]
rs2431031	1.00[YRI][hapmap]
rs2435898	1.00[AMR][1000 genomes]
rs2435900	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2435901	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2435902	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2435904	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2439923	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2543676	1.00[AMR][1000 genomes]
rs2566839	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2566841	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2566852	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2585074	1.00[AMR][1000 genomes]
rs2585092	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2585098	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs2585100	1.00[AMR][1000 genomes]
rs2585111	1.00[AMR][1000 genomes]
rs2585119	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2585122	1.00[AMR][1000 genomes]
rs2591067	1.00[YRI][hapmap]
rs2593213	1.00[YRI][hapmap]
rs2593224	1.00[AMR][1000 genomes]
rs2593227	1.00[AMR][1000 genomes]
rs2593240	1.00[AMR][1000 genomes]
rs2615219	1.00[YRI][hapmap]
rs2615248	1.00[AMR][1000 genomes]
rs2703585	0.84[AFR][1000 genomes]
rs2703591	1.00[AMR][1000 genomes]
rs2703603	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2703606	1.00[AMR][1000 genomes]
rs2703609	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2703615	1.00[YRI][hapmap]
rs2703618	1.00[AMR][1000 genomes]
rs2703621	0.89[AFR][1000 genomes]
rs2703622	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2733169	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2733173	1.00[AMR][1000 genomes]
rs2733186	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2733190	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2733193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2733196	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2733301	1.00[YRI][hapmap]
rs2733319	1.00[YRI][hapmap]
rs2733325	0.84[AFR][1000 genomes]
rs2733344	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2920271	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs8042069	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv904251	chr15:57241970-57575916	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57324600-57398600	Weak transcription	Fetal Muscle Leg	muscle
2	chr15:57353800-57406400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:57354200-57384600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr15:57356000-57393400	Weak transcription	Thymus	Thymus
5	chr15:57362800-57384200	Weak transcription	HepG2	liver
6	chr15:57363800-57378200	Weak transcription	Gastric	stomach
7	chr15:57363800-57382000	Weak transcription	Right Atrium	heart
8	chr15:57365200-57384000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr15:57365600-57385200	Weak transcription	HSMM	muscle
10	chr15:57365800-57384000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr15:57368000-57380400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:57371800-57382400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr15:57372000-57384000	Weak transcription	Dnd41	blood
14	chr15:57372600-57386000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr15:57372600-57404000	Weak transcription	HSMMtube	muscle
16	chr15:57372600-57404200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr15:57372800-57379000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr15:57372800-57380800	Weak transcription	Right Ventricle	heart
19	chr15:57372800-57384000	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr15:57372800-57384000	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr15:57372800-57384400	Weak transcription	Liver	Liver
22	chr15:57372800-57386000	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr15:57372800-57410200	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr15:57373000-57376200	Enhancers	Rectal Mucosa Donor 31	rectum
25	chr15:57373000-57382000	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr15:57373000-57384600	Weak transcription	Primary B cells from peripheral blood	blood
27	chr15:57373000-57385400	Weak transcription	Primary B cells from cord blood	blood
28	chr15:57373200-57377600	Weak transcription	Brain Angular Gyrus	brain
29	chr15:57373200-57381400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr15:57373200-57384200	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr15:57373200-57384600	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr15:57373400-57378000	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr15:57374000-57380400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr15:57374000-57385000	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr15:57374400-57377400	Weak transcription	Brain Hippocampus Middle	brain
36	chr15:57374400-57382000	Weak transcription	Psoas Muscle	Psoas
37	chr15:57374400-57389400	Weak transcription	NHEK	skin
38	chr15:57374600-57375800	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr15:57374600-57379000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr15:57374600-57382200	Weak transcription	Left Ventricle	heart
41	chr15:57374600-57382600	Weak transcription	Adipose Nuclei	Adipose
42	chr15:57374600-57384000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr15:57374600-57386000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr15:57374600-57390000	Weak transcription	HMEC	breast
45	chr15:57374600-57398600	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr15:57374800-57375600	Enhancers	Brain Germinal Matrix	brain
47	chr15:57374800-57375800	Weak transcription	Fetal Intestine Large	intestine
48	chr15:57374800-57376000	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr15:57374800-57376400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr15:57374800-57376400	Weak transcription	Colon Smooth Muscle	Colon

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