Variant report

Variant	rs2585105
Chromosome Location	chr15:57341781-57341782
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2593216	0.89[YRI][hapmap]
rs2703619	0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv1052052	chr15:57232111-57344561	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv542394	chr15:57232111-57344561	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv904251	chr15:57241970-57575916	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57311000-57347000	Weak transcription	Fetal Intestine Large	intestine
2	chr15:57316400-57345400	Weak transcription	Fetal Intestine Small	intestine
3	chr15:57324400-57349200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr15:57324600-57355800	Weak transcription	Primary B cells from cord blood	blood
5	chr15:57324600-57398600	Weak transcription	Fetal Muscle Leg	muscle
6	chr15:57324800-57347200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr15:57324800-57349400	Weak transcription	Right Ventricle	heart
8	chr15:57328200-57353600	Weak transcription	Pancreas	Pancrea
9	chr15:57328400-57343800	Weak transcription	Small Intestine	intestine
10	chr15:57328400-57345800	Weak transcription	Left Ventricle	heart
11	chr15:57328600-57355000	Weak transcription	Dnd41	blood
12	chr15:57329800-57349600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr15:57329800-57351400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr15:57330400-57343400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr15:57332000-57345200	Weak transcription	HepG2	liver
16	chr15:57332000-57346000	Weak transcription	Primary hematopoietic stem cells	blood
17	chr15:57332000-57349200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr15:57332000-57349400	Weak transcription	Thymus	Thymus
19	chr15:57332000-57355800	Weak transcription	Primary B cells from peripheral blood	blood
20	chr15:57332800-57343800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr15:57332800-57345800	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr15:57333400-57349400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr15:57334000-57345000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr15:57334000-57346000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr15:57334000-57346200	Weak transcription	Rectal Smooth Muscle	rectum
26	chr15:57334200-57343600	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr15:57335000-57347400	Weak transcription	Lung	lung
28	chr15:57335400-57349000	Weak transcription	NHEK	skin
29	chr15:57335600-57345400	Weak transcription	HUVEC	blood vessel
30	chr15:57335800-57343400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr15:57336400-57345000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr15:57336600-57349200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr15:57336600-57371800	Weak transcription	K562	blood
34	chr15:57336800-57346000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr15:57336800-57349000	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr15:57337000-57341800	Strong transcription	Fetal Thymus	thymus
37	chr15:57337200-57345800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr15:57337400-57342000	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr15:57337400-57349200	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr15:57337600-57345600	Weak transcription	Fetal Lung	lung
41	chr15:57337600-57351200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr15:57338200-57343800	Weak transcription	Right Atrium	heart
43	chr15:57338200-57350000	Weak transcription	Fetal Heart	heart
44	chr15:57338600-57345000	Weak transcription	Colon Smooth Muscle	Colon
45	chr15:57339000-57345800	Weak transcription	Psoas Muscle	Psoas
46	chr15:57339200-57350000	Weak transcription	HSMM	muscle
47	chr15:57339600-57343600	Weak transcription	GM12878-XiMat	blood
48	chr15:57339600-57349800	Weak transcription	Primary T cells from cord blood	blood
49	chr15:57339600-57349800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr15:57339600-57355600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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