Variant report
| Variant | rs2587642 |
|---|---|
| Chromosome Location | chr18:39089205-39089206 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs1893397 | 0.81[EUR][1000 genomes] |
| rs1942059 | 0.89[CEU][hapmap];0.95[GIH][hapmap];0.89[TSI][hapmap];0.85[EUR][1000 genomes] |
| rs1942061 | 0.85[EUR][1000 genomes] |
| rs1942073 | 0.88[EUR][1000 genomes] |
| rs1942074 | 0.89[EUR][1000 genomes] |
| rs1942075 | 0.89[CEU][hapmap];0.98[GIH][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes] |
| rs1942076 | 0.89[CEU][hapmap];0.89[EUR][1000 genomes] |
| rs1942077 | 0.89[EUR][1000 genomes] |
| rs1942079 | 0.87[EUR][1000 genomes] |
| rs1942080 | 0.85[EUR][1000 genomes] |
| rs1942087 | 0.80[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs2000705 | 0.87[EUR][1000 genomes] |
| rs2226735 | 0.87[EUR][1000 genomes] |
| rs2587616 | 0.80[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2587618 | 0.85[EUR][1000 genomes] |
| rs2587619 | 0.85[EUR][1000 genomes] |
| rs2587633 | 0.87[EUR][1000 genomes] |
| rs2587635 | 0.88[EUR][1000 genomes] |
| rs2612323 | 0.80[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs2612324 | 0.80[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs2612340 | 0.88[EUR][1000 genomes] |
| rs2612355 | 0.85[CEU][hapmap];0.88[EUR][1000 genomes] |
| rs2612357 | 0.80[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs2703159 | 0.89[EUR][1000 genomes] |
| rs2703177 | 0.88[EUR][1000 genomes] |
| rs2848764 | 0.89[EUR][1000 genomes] |
| rs2848765 | 0.87[EUR][1000 genomes] |
| rs2848781 | 0.80[AMR][1000 genomes];0.89[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv909564 | chr18:38739067-39179256 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv1066869 | chr18:38742896-39680723 | Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv543685 | chr18:38742896-39680723 | Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:39084200-39095000 | Weak transcription | HUES48 Cell Line | embryonic stem cell |
