Variant report

Variant	rs2590768
Chromosome Location	chr4:54508218-54508219
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs61561463	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829936	chr4:54367783-54556123	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54501400-54510800	Weak transcription	Right Atrium	heart
2	chr4:54505600-54508400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:54506800-54511000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr4:54507200-54510000	Weak transcription	Small Intestine	intestine
5	chr4:54507200-54510600	Weak transcription	Placenta	Placenta
6	chr4:54507200-54511000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr4:54507400-54509800	Weak transcription	Pancreas	Pancrea
8	chr4:54507400-54510800	Weak transcription	Esophagus	oesophagus
9	chr4:54507400-54510800	Weak transcription	Left Ventricle	heart
10	chr4:54507400-54511400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr4:54507400-54511600	Weak transcription	Right Ventricle	heart
12	chr4:54507800-54509000	Weak transcription	Stomach Mucosa	stomach
13	chr4:54507800-54509800	Weak transcription	Fetal Intestine Large	intestine
14	chr4:54507800-54509800	Weak transcription	Fetal Intestine Small	intestine
15	chr4:54507800-54510400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr4:54507800-54510400	Weak transcription	Duodenum Mucosa	Duodenum
17	chr4:54507800-54510800	Weak transcription	Lung	lung
18	chr4:54507800-54510800	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr4:54507800-54517000	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr4:54507800-54520600	Weak transcription	Gastric	stomach
21	chr4:54508000-54508800	Enhancers	GM12878-XiMat	blood
22	chr4:54508000-54511000	Weak transcription	Fetal Lung	lung
23	chr4:54508000-54512600	Weak transcription	Adipose Nuclei	Adipose
24	chr4:54508000-54519200	Weak transcription	Fetal Heart	heart

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