Variant report

Variant	rs2590777
Chromosome Location	chr4:54601923-54601924
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11933972	1.00[AMR][1000 genomes]
rs11936607	1.00[AMR][1000 genomes]
rs17083057	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv15357	chr4:54591392-54603209	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv879015	chr4:54596466-54665559	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54598400-54602600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr4:54600000-54603400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:54600200-54602400	Enhancers	HSMM	muscle
4	chr4:54601200-54602200	Enhancers	Osteobl	bone
5	chr4:54601200-54603400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:54601200-54603400	Enhancers	NHDF-Ad	bronchial
7	chr4:54601600-54602400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr4:54601800-54602000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr4:54601800-54602600	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr4:54601800-54603200	Enhancers	NHLF	lung
11	chr4:54601800-54603400	Enhancers	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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