Variant report

Variant	rs2590779
Chromosome Location	chr4:54523364-54523365
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFYB	chr4:54523217-54523505	K562	blood:	n/a	n/a

Variant related genes	Relation type
LNX1	TF binding region
ENSG00000249341	TF binding region

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1022187	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1546527	0.85[ASN][1000 genomes]
rs2412470	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2572292	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2572300	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2590770	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2590771	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2590773	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2590778	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2590809	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2590810	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2616383	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2616387	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2616388	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2616389	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2616425	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2668522	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2668523	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2668525	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2668526	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2668527	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2668528	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2668550	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2668551	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2668552	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2668567	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3113662	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs750545	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829936	chr4:54367783-54556123	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54519400-54523600	Enhancers	Fetal Muscle Leg	muscle
2	chr4:54519600-54523400	Enhancers	NHLF	lung
3	chr4:54520200-54524400	Weak transcription	Ovary	ovary
4	chr4:54520800-54524000	Weak transcription	Fetal Heart	heart
5	chr4:54521000-54524200	Weak transcription	Fetal Stomach	stomach
6	chr4:54521600-54523400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr4:54522000-54524600	Weak transcription	Colon Smooth Muscle	Colon
8	chr4:54522200-54526000	Weak transcription	Gastric	stomach
9	chr4:54522200-54526000	Weak transcription	Right Atrium	heart
10	chr4:54522400-54525400	Weak transcription	Stomach Mucosa	stomach
11	chr4:54522800-54523400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr4:54522800-54523400	Flanking Active TSS	NHDF-Ad	bronchial
13	chr4:54523000-54523400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr4:54523200-54523400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:54523200-54523400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr4:54523200-54523400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
17	chr4:54523200-54523400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr4:54523200-54523400	Enhancers	Esophagus	oesophagus
19	chr4:54523200-54523400	Enhancers	Spleen	Spleen
20	chr4:54523200-54523400	Enhancers	HSMM	muscle
21	chr4:54523200-54523400	Enhancers	HSMMtube	muscle
22	chr4:54523200-54523400	Enhancers	Osteobl	bone

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