Variant report

Variant	rs259383
Chromosome Location	chr6:147130417-147130418
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10457058	0.81[ASN][1000 genomes]
rs10457059	0.81[ASN][1000 genomes]
rs10872590	0.81[ASN][1000 genomes]
rs11967903	0.81[ASN][1000 genomes]
rs12190780	0.81[ASN][1000 genomes]
rs12191031	0.81[ASN][1000 genomes]
rs12191074	0.81[ASN][1000 genomes]
rs12192109	0.81[ASN][1000 genomes]
rs12193933	0.81[ASN][1000 genomes]
rs12196674	0.81[ASN][1000 genomes]
rs12203958	0.81[ASN][1000 genomes]
rs12205535	0.81[ASN][1000 genomes]
rs12206612	0.81[ASN][1000 genomes]
rs12208399	0.81[ASN][1000 genomes]
rs12210790	0.84[ASN][1000 genomes]
rs12211458	0.81[ASN][1000 genomes]
rs12213086	0.81[ASN][1000 genomes]
rs12216213	0.81[ASN][1000 genomes]
rs259368	0.81[ASN][1000 genomes]
rs259374	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs259375	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs259380	0.94[EUR][1000 genomes]
rs259387	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41285877	0.81[ASN][1000 genomes]
rs508146	0.81[ASN][1000 genomes]
rs58441910	0.81[ASN][1000 genomes]
rs62434408	0.81[ASN][1000 genomes]
rs62434410	0.81[ASN][1000 genomes]
rs62434412	0.81[ASN][1000 genomes]
rs62434418	0.81[ASN][1000 genomes]
rs62434419	0.81[ASN][1000 genomes]
rs62434421	0.81[ASN][1000 genomes]
rs62434422	0.81[ASN][1000 genomes]
rs62434423	0.81[ASN][1000 genomes]
rs62434425	0.81[ASN][1000 genomes]
rs62434426	0.81[ASN][1000 genomes]
rs62434427	0.81[ASN][1000 genomes]
rs6909070	0.81[ASN][1000 genomes]
rs6922552	0.81[ASN][1000 genomes]
rs6929822	0.81[ASN][1000 genomes]
rs73578231	0.81[ASN][1000 genomes]
rs7747334	0.81[ASN][1000 genomes]
rs7770567	0.81[ASN][1000 genomes]
rs9497651	0.81[ASN][1000 genomes]
rs9497652	0.81[ASN][1000 genomes]
rs9497653	0.81[ASN][1000 genomes]
rs9497654	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv966634	chr6:147128760-147141217	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2518343	chr6:147129690-147138004	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147125400-147133600	Weak transcription	K562	blood
2	chr6:147129600-147136800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:147129800-147130800	Enhancers	Placenta	Placenta

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