Variant report

Variant	rs2596237
Chromosome Location	chr15:33733218-33733219
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2596235	0.85[GIH][hapmap];0.81[LWK][hapmap];0.80[MKK][hapmap];0.82[TSI][hapmap]
rs2596239	1.00[CEU][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2596240	0.85[CEU][hapmap];0.95[GIH][hapmap];0.86[EUR][1000 genomes]
rs2676023	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs2676024	0.92[CEU][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap];0.96[EUR][1000 genomes]
rs2676027	0.84[EUR][1000 genomes]
rs2676028	0.92[CEU][hapmap];0.94[EUR][1000 genomes]
rs28568622	0.85[EUR][1000 genomes]
rs7165065	0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533346	chr15:33469439-33809641	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv832964	chr15:33608771-33784018	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv568919	chr15:33638335-33736683	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	esv34041	chr15:33720726-33871487	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33732400-33738800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr15:33732600-33733400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr15:33732600-33734000	Enhancers	Primary hematopoietic stem cells	blood
4	chr15:33732600-33739600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr15:33732800-33746600	Weak transcription	Aorta	Aorta
6	chr15:33733000-33733400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr15:33733000-33733600	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
8	chr15:33733200-33733400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr15:33733200-33733400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr15:33733200-33733400	Enhancers	Brain Anterior Caudate	brain
11	chr15:33733200-33735800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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