Variant report

Variant rs2596340
Chromosome Location chr1:145108869-145108870
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:105 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:145096800-145113400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr1:145097200-145110600 Weak transcription Pancreas Pancrea
3 chr1:145097200-145110800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
4 chr1:145097400-145113000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
5 chr1:145097400-145114200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
6 chr1:145097800-145110800 Weak transcription Fetal Stomach stomach
7 chr1:145097800-145118000 Weak transcription Colonic Mucosa Colon
8 chr1:145097800-145130000 Weak transcription Right Ventricle heart
9 chr1:145098000-145111400 Weak transcription Brain Anterior Caudate brain
10 chr1:145098000-145112200 Weak transcription H1 Cell Line embryonic stem cell
11 chr1:145098200-145109400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
12 chr1:145098200-145109400 Weak transcription iPS-20b Cell Line embryonic stem cell
13 chr1:145098200-145110000 Weak transcription Placenta Amnion Placenta Amnion
14 chr1:145098200-145110600 Weak transcription iPS-18 Cell Line embryonic stem cell
15 chr1:145098200-145110600 Weak transcription Aorta Aorta
16 chr1:145098200-145112400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
17 chr1:145098200-145113800 Weak transcription Skeletal Muscle Male skeletal muscle
18 chr1:145098200-145118000 Weak transcription Brain Angular Gyrus brain
19 chr1:145098200-145118000 Weak transcription Stomach Smooth Muscle stomach
20 chr1:145098200-145122400 Weak transcription Brain Substantia Nigra brain
21 chr1:145098400-145109400 Weak transcription HUES6 Cell Line embryonic stem cell
22 chr1:145098400-145109400 Weak transcription Primary hematopoietic stem cells short term culture blood
23 chr1:145098400-145110800 Weak transcription ES-WA7 Cell Line embryonic stem cell
24 chr1:145098400-145118000 Weak transcription Rectal Smooth Muscle rectum
25 chr1:145098800-145109600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
26 chr1:145099000-145109400 Weak transcription Primary neutrophils fromperipheralblood blood
27 chr1:145099000-145111400 Weak transcription Colon Smooth Muscle Colon
28 chr1:145099000-145115800 Weak transcription Fetal Brain Female brain
29 chr1:145099200-145109600 Strong transcription Monocytes-CD14+_RO01746 blood
30 chr1:145099800-145109400 Weak transcription Primary T helper naive cells fromperipheralblood blood
31 chr1:145099800-145110800 Weak transcription Lung lung
32 chr1:145099800-145119400 Weak transcription Brain Cingulate Gyrus brain
33 chr1:145099800-145122400 Weak transcription Brain Germinal Matrix brain
34 chr1:145100400-145118000 Weak transcription Small Intestine intestine
35 chr1:145101000-145109000 Strong transcription Primary monocytes fromperipheralblood blood
36 chr1:145101200-145113200 Strong transcription Liver Liver
37 chr1:145101600-145110600 Weak transcription HUVEC blood vessel
38 chr1:145101800-145109400 Weak transcription ES-I3 Cell Line embryonic stem cell
39 chr1:145102000-145110000 Strong transcription HSMM muscle
40 chr1:145102000-145110200 Weak transcription Breast Myoepithelial Primary Cells Breast
41 chr1:145102000-145113200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
42 chr1:145102800-145109400 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
43 chr1:145103000-145109800 Strong transcription Primary hematopoietic stem cells blood
44 chr1:145103000-145110200 Weak transcription HUES48 Cell Line embryonic stem cell
45 chr1:145103600-145109400 Weak transcription NHLF lung
46 chr1:145103600-145109600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
47 chr1:145103600-145110400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
48 chr1:145103800-145109400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
49 chr1:145103800-145112400 Weak transcription Hela-S3 cervix
50 chr1:145104000-145109400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung

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