Variant report

Variant	rs2596475
Chromosome Location	chr6:31326324-31326325
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:42)
CpG islands
(count:61)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:42 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RFX5	chr6:31322211-31327077	IMR90	lung:	n/a	n/a
2	EP300	chr6:31326273-31326467	GM12878	blood:	n/a	n/a
3	EP300	chr6:31326215-31326440	GM12878	blood:	n/a	n/a
4	POLR2A	chr6:31317673-31326364	GM12891	blood:	n/a	n/a
5	POU2F2	chr6:31326127-31326352	GM12878	blood:	n/a	n/a
6	BCL11A	chr6:31326082-31326510	GM12878	blood:	n/a	n/a
7	PAX5	chr6:31326109-31326386	GM12878	blood:	n/a	n/a
8	BATF	chr6:31326056-31326411	GM12878	blood:	n/a	chr6:31326271-31326280
9	POLR2A	chr6:31317939-31326462	GM12892	blood:	n/a	n/a
10	POLR2A	chr6:31326082-31326385	GM12891	blood:	n/a	n/a
11	IRF4	chr6:31325987-31326537	GM12878	blood:	n/a	n/a
12	YY1	chr6:31326065-31326333	GM12878	blood:	n/a	n/a
13	BATF	chr6:31326107-31326458	GM12878	blood:	n/a	chr6:31326271-31326280
14	POLR2A	chr6:31317763-31326416	GM12878	blood:	n/a	n/a
15	POLR2A	chr6:31317961-31326519	GM12892	blood:	n/a	n/a
16	POLR2A	chr6:31317721-31326503	GM12878	blood:	n/a	n/a
17	POLR2A	chr6:31326081-31326448	GM12891	blood:	n/a	n/a
18	POLR2A	chr6:31326024-31326427	GM12891	blood:	n/a	n/a
19	NFIC	chr6:31325977-31326606	GM12878	blood:	n/a	n/a
20	SPI1	chr6:31326039-31326440	GM12891	blood:	n/a	n/a
21	RUNX3	chr6:31325967-31326586	GM12878	blood:	n/a	n/a
22	POLR2A	chr6:31317900-31326472	GM12892	blood:	n/a	n/a
23	IRF4	chr6:31325988-31326449	GM12878	blood:	n/a	n/a
24	SPI1	chr6:31326060-31326530	GM12891	blood:	n/a	n/a
25	RFX5	chr6:31324284-31326494	SK-N-SH	brain:	n/a	n/a
26	RUNX3	chr6:31326053-31326553	GM12878	blood:	n/a	n/a
27	EBF1	chr6:31326046-31326332	GM12878	blood:	n/a	n/a
28	POLR2A	chr6:31317985-31326394	GM12892	blood:	n/a	n/a
29	PAX5	chr6:31326167-31326371	GM12878	blood:	n/a	n/a
30	TBP	chr6:31326088-31326407	GM12878	blood:	n/a	n/a
31	TAF1	chr6:31326096-31326342	GM12891	blood:	n/a	n/a
32	PAX5	chr6:31325972-31326530	GM12878	blood:	n/a	n/a
33	POLR2A	chr6:31326011-31326353	GM12878	blood:	n/a	n/a
34	SPI1	chr6:31326090-31326467	GM12878	blood:	n/a	n/a
35	ATF2	chr6:31326062-31326576	GM12878	blood:	n/a	n/a
36	BCL11A	chr6:31326086-31326349	GM12878	blood:	n/a	n/a
37	MTA3	chr6:31317858-31326579	GM12878	blood:	n/a	n/a
38	POU2F2	chr6:31326005-31326437	GM12878	blood:	n/a	n/a
39	SPI1	chr6:31326215-31326443	GM12878	blood:	n/a	n/a
40	TBL1XR1	chr6:31326086-31326468	GM12878	blood:	n/a	n/a
41	BHLHE40	chr6:31326283-31326390	GM12878	blood:	n/a	n/a
42	MXI1	chr6:31326274-31326379	GM12878	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:31326324-31326374	GM12892	blood:	n/a
2	chr6:31326324-31326374	AoSMC	blood vessel:	n/a
3	chr6:31326324-31326374	HRPEpiC	eye:	n/a
4	chr6:31326324-31326374	PrEC	prostate:	n/a
5	chr6:31326324-31326374	IMR90	lung:	fetal
6	chr6:31326324-31326374	HRCEpiC	kidney:	n/a
7	chr6:31326324-31326374	HPAEpiC	pulmonary alveolar:	n/a
8	chr6:31326324-31326374	Hela-S3	cervix:	n/a
9	chr6:31326324-31326374	SKMC	muscle:	n/a
10	chr6:31326324-31326374	HEK293	kidney:	embryo
11	chr6:31326324-31326374	SK-N-SH	brain:	n/a
12	chr6:31326324-31326374	NHDF-neo	bronchial:	n/a
13	chr6:31326324-31326374	K562	blood:	n/a
14	chr6:31326324-31326374	RPTEC	kidney:	n/a
15	chr6:31326324-31326374	NHBE	bronchial:	n/a
16	chr6:31326324-31326374	HMEC	breast:	n/a
17	chr6:31326324-31326374	T-47D	breast:	n/a
18	chr6:31326324-31326374	AG10803	skin:	n/a
19	chr6:31326324-31326374	HAEpiC	amniotic membrane:	n/a
20	chr6:31326324-31326374	A549	lung:	n/a
21	chr6:31326324-31326374	GM12891	blood:	n/a
22	chr6:31326324-31326374	HL-60	blood:	n/a
23	chr6:31326324-31326374	SK-N-SH_RA	brain:	n/a
24	chr6:31326324-31326374	MCF10A-Er-Src	breast:	n/a
25	chr6:31326324-31326374	Hepatocyte	liver:	n/a
26	chr6:31326324-31326374	NH-A	brain:	n/a
27	chr6:31326324-31326374	HRE	kidney:	n/a
28	chr6:31326324-31326374	AG09309	skin:	n/a
29	chr6:31326324-31326374	HCT-116	colon:	n/a
30	chr6:31326324-31326374	ovcar-3	ovarian:	n/a
31	chr6:31326324-31326374	HepG2	liver:	n/a
32	chr6:31326324-31326374	H1-hESC	embryonic stem cell:	embryo
33	chr6:31326324-31326374	GM19239	blood:	n/a
34	chr6:31326324-31326374	HEEpiC	esophagus:	n/a
35	chr6:31326324-31326374	BJ	skin:	n/a
36	chr6:31326324-31326374	NB4	blood:	n/a
37	chr6:31326324-31326374	GM12878	blood:	n/a
38	chr6:31326324-31326374	LNCaP	prostate:	n/a
39	chr6:31326324-31326374	HCF	heart:	n/a
40	chr6:31326324-31326374	SAEC	small airway:	n/a
41	chr6:31326324-31326374	AG09319	gingival:	n/a
42	chr6:31326324-31326374	GM06990	blood:	n/a
43	chr6:31326324-31326374	Jurkat	blood:	n/a
44	chr6:31326324-31326374	PFSK-1	brain:	n/a
45	chr6:31326324-31326374	HUVEC	blood vessel:	n/a
46	chr6:31326324-31326374	HCM	heart:	n/a
47	chr6:31326324-31326374	NT2-D1	testis:	n/a
48	chr6:31326324-31326374	CMK	blood:	n/a
49	chr6:31326324-31326374	U87	brain:	n/a
50	chr6:31326324-31326374	HNPCEpiC	eye:	n/a

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:29689852..29692667-chr6:31324164..31326641,2	K562	blood:
2	chr6:31241176..31243692-chr6:31324996..31327759,3	MCF-7	breast:

No data

Variant related genes	Relation type
HLA-B	TF binding region
HLA-B	CpG island
ENSG00000204642	Chromatin interaction
ENSG00000214892	Chromatin interaction
ENSG00000225864	Chromatin interaction

Extended variants
information (count: 115 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2395475	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2395476	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2523587	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2523594	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2523595	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs67366970	0.84[AMR][1000 genomes]
rs9266214	0.80[AMR][1000 genomes]
rs9266217	0.81[AMR][1000 genomes]
rs9266231	0.86[AMR][1000 genomes]
rs9266232	0.86[AMR][1000 genomes]
rs9266242	0.85[AMR][1000 genomes]
rs9266243	0.85[AMR][1000 genomes]
rs9266250	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:102 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3519970	chr6:30382942-31378788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
2	esv3519971	chr6:30382942-31378788	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
3	nsv1015372	chr6:30704734-31582152	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
4	nsv538173	chr6:30704734-31582152	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
5	nsv1029442	chr6:31006647-31449207	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	82 gene(s)	inside rSNPs	diseases
6	nsv428140	chr6:31028290-31462106	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	89 gene(s)	inside rSNPs	diseases
7	esv2758042	chr6:31028290-31497106	Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	101 gene(s)	inside rSNPs	diseases
8	esv2759414	chr6:31028290-31542308	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	151 gene(s)	inside rSNPs	diseases
9	nsv1019637	chr6:31104401-31354706	Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
10	nsv1029569	chr6:31104401-31412740	Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
11	nsv538174	chr6:31104401-31412740	Flanking Bivalent TSS/Enh Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
12	nsv1025909	chr6:31131121-31354706	Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	51 gene(s)	inside rSNPs	diseases
13	nsv538175	chr6:31131121-31354706	Active TSS Bivalent Enhancer Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	51 gene(s)	inside rSNPs	diseases
14	nsv1015890	chr6:31131121-31449207	Enhancers Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
15	nsv538176	chr6:31131121-31449207	Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
16	nsv1024887	chr6:31162849-31354706	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
17	nsv538177	chr6:31162849-31354706	Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
18	nsv1015903	chr6:31162849-31412740	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
19	nsv538178	chr6:31162849-31412740	Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
20	nsv1031682	chr6:31162849-31449207	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
21	nsv538179	chr6:31162849-31449207	Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
22	esv3381377	chr6:31192213-31498578	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
23	esv3340592	chr6:31192248-31498535	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
24	nsv432867	chr6:31196671-31343862	Strong transcription Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
25	nsv538180	chr6:31206639-31386279	Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	42 gene(s)	inside rSNPs	diseases
26	nsv1029142	chr6:31206639-31449207	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	45 gene(s)	inside rSNPs	diseases
27	nsv1021052	chr6:31206639-31485736	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
28	esv3328153	chr6:31230846-31327330	Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
29	esv3475034	chr6:31234427-31327274	Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
30	esv3475035	chr6:31234427-31327274	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
31	nsv601503	chr6:31237229-31336891	Enhancers Genic enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
32	nsv601507	chr6:31237586-31339844	Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
33	esv2752834	chr6:31242621-31343821	Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
34	esv3374087	chr6:31250655-31330669	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
35	esv2757161	chr6:31251360-31335707	Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
36	nsv1029526	chr6:31256354-31449207	Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	42 gene(s)	inside rSNPs	diseases
37	nsv538181	chr6:31256354-31449207	Active TSS Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	42 gene(s)	inside rSNPs	diseases
38	nsv1029508	chr6:31269776-31445712	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
39	nsv538182	chr6:31269776-31445712	Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
40	esv1830805	chr6:31269777-31450100	Flanking Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	41 gene(s)	inside rSNPs	diseases
41	esv33563	chr6:31275505-31453668	Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
42	nsv601570	chr6:31276751-31451476	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
43	nsv1018705	chr6:31277798-31337397	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
44	nsv538183	chr6:31277798-31337397	Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
45	nsv538184	chr6:31277798-31445712	Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
46	nsv1029678	chr6:31279535-31449207	Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
47	nsv538185	chr6:31279535-31449207	Active TSS Flanking Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
48	nsv1022451	chr6:31279535-31485736	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
49	nsv601608	chr6:31280101-31389784	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
50	nsv601609	chr6:31280101-31799786	Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	332 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2596475	HLA-C	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:31323800-31326600	Active TSS	Duodenum Smooth Muscle	Duodenum
2	chr6:31325200-31326400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:31325400-31334600	Weak transcription	Pancreas	Pancrea
4	chr6:31325600-31326400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:31325600-31326600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr6:31325800-31326400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
7	chr6:31325800-31326400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
8	chr6:31325800-31326400	Bivalent Enhancer	NHDF-Ad	bronchial
9	chr6:31325800-31326600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
10	chr6:31325800-31326600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
11	chr6:31325800-31326800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
12	chr6:31325800-31326800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
13	chr6:31326000-31326400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
14	chr6:31326000-31326400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
15	chr6:31326000-31326600	Enhancers	Primary T cells from cord blood	blood
16	chr6:31326000-31326600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
17	chr6:31326000-31326600	Weak transcription	NHLF	lung
18	chr6:31326000-31327200	Enhancers	Primary B cells from peripheral blood	blood
19	chr6:31326200-31326400	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr6:31326200-31326400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr6:31326200-31326600	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr6:31326200-31326600	Active TSS	GM12878-XiMat	blood
23	chr6:31326200-31327000	Enhancers	Primary B cells from cord blood	blood
24	chr6:31326200-31327200	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr6:31326200-31327800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr6:31326200-31328200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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