Variant report

Variant rs2597698
Chromosome Location chr1:149685311-149685312
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:50 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:149683000-149685400 Active TSS iPS-20b Cell Line embryonic stem cell
2 chr1:149683600-149685400 Active TSS hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
3 chr1:149683600-149685400 Active TSS iPS DF 6.9 Cell Line embryonic stem cell
4 chr1:149683600-149685600 Active TSS HUES64 Cell Line embryonic stem cell
5 chr1:149684000-149685400 Active TSS hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
6 chr1:149684000-149685400 Bivalent/Poised TSS Brain Germinal Matrix brain
7 chr1:149684000-149685400 Active TSS Fetal Kidney kidney
8 chr1:149684000-149685600 Active TSS ES-I3 Cell Line embryonic stem cell
9 chr1:149684200-149685400 Active TSS Brain Hippocampus Middle brain
10 chr1:149684200-149685400 Active TSS Brain Dorsolateral Prefrontal Cortex brain
11 chr1:149684200-149685400 Active TSS Colonic Mucosa Colon
12 chr1:149684200-149685400 ZNF genes & repeats Esophagus oesophagus
13 chr1:149684200-149685400 Bivalent/Poised TSS Fetal Intestine Large intestine
14 chr1:149684200-149685400 ZNF genes & repeats Lung lung
15 chr1:149684200-149685400 Active TSS Rectal Mucosa Donor 29 rectum
16 chr1:149684200-149685400 Bivalent/Poised TSS HepG2 liver
17 chr1:149684400-149685400 Active TSS Brain Substantia Nigra brain
18 chr1:149684400-149685400 Bivalent/Poised TSS Duodenum Mucosa Duodenum
19 chr1:149684600-149685400 Bivalent/Poised TSS Cortex derived primary cultured neurospheres brain
20 chr1:149684600-149685600 Active TSS Hela-S3 cervix
21 chr1:149684800-149685400 Flanking Active TSS Adipose Nuclei Adipose
22 chr1:149684800-149685400 Flanking Active TSS Fetal Adrenal Gland Adrenal Gland
23 chr1:149684800-149685600 Bivalent/Poised TSS iPS-15b Cell Line embryonic stem cell
24 chr1:149685000-149685400 Flanking Active TSS H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
25 chr1:149685000-149685400 Flanking Active TSS H9 Cell Line embryonic stem cell
26 chr1:149685000-149685400 Flanking Active TSS HUES48 Cell Line embryonic stem cell
27 chr1:149685000-149685400 Flanking Active TSS HUES6 Cell Line embryonic stem cell
28 chr1:149685000-149685400 Flanking Active TSS iPS-18 Cell Line embryonic stem cell
29 chr1:149685000-149685400 Flanking Active TSS ES-UCSF4 Cell Line embryonic stem cell
30 chr1:149685000-149685400 Flanking Bivalent TSS/Enh Foreskin Fibroblast Primary Cells skin01 Skin
31 chr1:149685000-149685400 Flanking Bivalent TSS/Enh Fetal Brain Female brain
32 chr1:149685000-149685400 Flanking Active TSS Fetal Lung lung
33 chr1:149685000-149685400 Flanking Active TSS Gastric stomach
34 chr1:149685000-149685600 Active TSS Brain Angular Gyrus brain
35 chr1:149685200-149685400 Bivalent/Poised TSS H1 Cell Line embryonic stem cell
36 chr1:149685200-149685400 Flanking Active TSS H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
37 chr1:149685200-149685400 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
38 chr1:149685200-149685400 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
39 chr1:149685200-149685400 Bivalent/Poised TSS H9 Derived Neuron Cultured Cells ES cell derived
40 chr1:149685200-149685400 Flanking Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
41 chr1:149685200-149685400 Flanking Active TSS iPS DF 19.11 Cell Line embryonic stem cell
42 chr1:149685200-149685400 Bivalent/Poised TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
43 chr1:149685200-149685400 Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
44 chr1:149685200-149685400 Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
45 chr1:149685200-149685400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
46 chr1:149685200-149685400 Bivalent/Poised TSS Brain Anterior Caudate brain
47 chr1:149685200-149685400 Active TSS Fetal Heart heart
48 chr1:149685200-149685400 Bivalent/Poised TSS Fetal Intestine Small intestine
49 chr1:149685200-149685400 Enhancers Fetal Stomach stomach
50 chr1:149685200-149686600 Weak transcription Primary hematopoietic stem cells short term culture blood

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