Variant report

Variant	rs2598408
Chromosome Location	chr7:33586237-33586238
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2392246	0.92[MKK][hapmap]
rs2700698	0.96[CEU][hapmap];0.89[GIH][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2700699	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4720122	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933018	chr7:33506325-33707270	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830945	chr7:33526648-33670592	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1794786	chr7:33586237-33599818	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2598408	ZNRF2	cis	parietal	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33572000-33587200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:33574600-33594200	Weak transcription	Aorta	Aorta
3	chr7:33576000-33587600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr7:33577800-33589200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr7:33579000-33599000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr7:33579000-33602800	Weak transcription	Fetal Lung	lung
7	chr7:33579200-33598800	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr7:33579400-33594000	Weak transcription	HSMM	muscle
9	chr7:33579800-33590000	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr7:33580000-33589400	Weak transcription	Fetal Heart	heart
11	chr7:33581000-33601800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr7:33584200-33591600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr7:33584400-33601200	Weak transcription	Ovary	ovary
14	chr7:33584600-33586400	Weak transcription	Fetal Muscle Leg	muscle
15	chr7:33584600-33587600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr7:33584600-33591000	Weak transcription	HSMMtube	muscle
17	chr7:33584800-33594200	Weak transcription	Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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