Variant report

Variant	rs25990
Chromosome Location	chr5:14710035-14710036
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:14671524..14673260-chr5:14708223..14710525,2	MCF-7	breast:
2	chr5:14709865..14711953-chr5:14714629..14717421,2	K562	blood:

Variant related genes	Relation type
ENSG00000154122	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs25989	0.92[ASN][1000 genomes]
rs25991	0.87[ASN][1000 genomes]
rs31924	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026914	chr5:14237782-14751588	Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1018187	chr5:14385164-15127103	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:14674000-14712800	Strong transcription	Fetal Intestine Large	intestine
2	chr5:14684600-14726200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr5:14690800-14710600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:14690800-14717200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:14691000-14711000	Weak transcription	Fetal Brain Male	brain
6	chr5:14691000-14711200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr5:14691000-14712800	Strong transcription	Hela-S3	cervix
8	chr5:14691000-14722200	Weak transcription	Stomach Mucosa	stomach
9	chr5:14691200-14720400	Weak transcription	Psoas Muscle	Psoas
10	chr5:14691600-14715000	Strong transcription	GM12878-XiMat	blood
11	chr5:14694000-14717800	Weak transcription	Fetal Kidney	kidney
12	chr5:14696600-14717800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr5:14696600-14727600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr5:14696800-14711200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr5:14696800-14718600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr5:14697000-14712800	Strong transcription	Fetal Intestine Small	intestine
17	chr5:14699600-14712600	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr5:14700000-14711200	Weak transcription	Colon Smooth Muscle	Colon
19	chr5:14700000-14723800	Weak transcription	Small Intestine	intestine
20	chr5:14700200-14712000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr5:14701000-14710400	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr5:14701400-14716000	Strong transcription	Fetal Stomach	stomach
23	chr5:14701400-14717000	Strong transcription	Stomach Smooth Muscle	stomach
24	chr5:14701600-14711800	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr5:14701600-14714400	Strong transcription	Fetal Muscle Leg	muscle
26	chr5:14701600-14716000	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr5:14701800-14714400	Weak transcription	Fetal Heart	heart
28	chr5:14702400-14710600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr5:14702600-14713600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr5:14704400-14717000	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr5:14704400-14719000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr5:14704800-14715400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr5:14705200-14713800	Strong transcription	Fetal Muscle Trunk	muscle
34	chr5:14705400-14713800	Strong transcription	Placenta	Placenta
35	chr5:14705400-14715000	Strong transcription	Left Ventricle	heart
36	chr5:14705400-14717000	Strong transcription	Rectal Mucosa Donor 31	rectum
37	chr5:14705400-14717400	Strong transcription	A549	lung
38	chr5:14705600-14711000	Strong transcription	Fetal Lung	lung
39	chr5:14705600-14717200	Strong transcription	Sigmoid Colon	Sigmoid Colon
40	chr5:14705600-14718400	Strong transcription	Fetal Brain Female	brain
41	chr5:14706000-14712000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr5:14706600-14717000	Strong transcription	Duodenum Smooth Muscle	Duodenum
43	chr5:14706800-14715000	Strong transcription	Primary neutrophils fromperipheralblood	blood
44	chr5:14707000-14715000	Strong transcription	Gastric	stomach
45	chr5:14707000-14715800	Strong transcription	Lung	lung
46	chr5:14707200-14710600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr5:14707200-14710600	Strong transcription	K562	blood
48	chr5:14707200-14711400	Strong transcription	NHEK	skin
49	chr5:14707200-14712000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr5:14707200-14712800	Strong transcription	HSMM	muscle

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