Variant report

Variant	rs2601844
Chromosome Location	chr4:86798250-86798251
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1452684	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1452685	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1901675	1.00[AMR][1000 genomes]
rs1901676	1.00[AMR][1000 genomes]
rs1901678	1.00[AMR][1000 genomes]
rs2018383	1.00[AMR][1000 genomes]
rs2601841	0.86[AFR][1000 genomes]
rs2601842	0.86[AFR][1000 genomes]
rs2601848	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2601850	0.86[AFR][1000 genomes]
rs2601868	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2665864	0.86[AFR][1000 genomes]
rs2665870	0.86[AFR][1000 genomes]
rs2665872	1.00[AMR][1000 genomes]
rs2665873	1.00[AMR][1000 genomes]
rs345341	1.00[AMR][1000 genomes]
rs345342	1.00[AMR][1000 genomes]
rs345344	1.00[AMR][1000 genomes]
rs345345	1.00[AMR][1000 genomes]
rs345349	1.00[AMR][1000 genomes]
rs345350	1.00[AMR][1000 genomes]
rs345351	1.00[AMR][1000 genomes]
rs345352	1.00[AMR][1000 genomes]
rs345357	1.00[AMR][1000 genomes]
rs6818942	0.86[AFR][1000 genomes]
rs72970076	0.82[AFR][1000 genomes]
rs7688236	0.84[AFR][1000 genomes]
rs7693916	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830000	chr4:86745341-86909059	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv879519	chr4:86786204-86871282	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86750000-86809200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr4:86779800-86800200	Weak transcription	Primary B cells from cord blood	blood
3	chr4:86788000-86804000	Weak transcription	Aorta	Aorta
4	chr4:86788000-86807400	Weak transcription	Left Ventricle	heart
5	chr4:86788000-86810800	Weak transcription	Primary B cells from peripheral blood	blood
6	chr4:86788000-86812400	Weak transcription	HSMM	muscle
7	chr4:86788200-86812000	Weak transcription	Fetal Muscle Leg	muscle
8	chr4:86790800-86835400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr4:86791000-86803600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:86791000-86804200	Weak transcription	HSMMtube	muscle
11	chr4:86791200-86844400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr4:86791600-86802000	Weak transcription	NHDF-Ad	bronchial
13	chr4:86794600-86804800	Weak transcription	HUVEC	blood vessel
14	chr4:86794800-86805600	Weak transcription	Pancreas	Pancrea
15	chr4:86798000-86802800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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