Variant report

Variant	rs2603145
Chromosome Location	chr2:39182021-39182022
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:39181118..39182060-chr2:39407089..39408066,4	MCF-7	breast:
2	chr2:39179721..39182563-chr2:39215625..39217531,2	MCF-7	breast:
3	chr2:39181118..39182060-chr2:39407089..39408066,2	MCF-7	breast:
4	chr2:39172326..39176681-chr2:39177531..39182855,6	MCF-7	breast:
5	chr2:39132787..39133640-chr2:39181092..39182273,3	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10172714	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10186762	0.84[AMR][1000 genomes]
rs10192250	0.87[AMR][1000 genomes]
rs10201980	0.80[AMR][1000 genomes]
rs10779924	0.83[EUR][1000 genomes]
rs13023273	0.84[AMR][1000 genomes]
rs1454221	0.84[AMR][1000 genomes]
rs1454222	0.84[AMR][1000 genomes]
rs1454223	0.84[AMR][1000 genomes]
rs1454225	0.84[AMR][1000 genomes]
rs1531021	0.81[ASN][1000 genomes]
rs1869514	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1947432	0.84[AMR][1000 genomes]
rs2168044	0.83[EUR][1000 genomes]
rs2278912	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2278913	0.80[AMR][1000 genomes]
rs2278914	0.84[AMR][1000 genomes]
rs2290445	0.84[AMR][1000 genomes]
rs2305516	0.80[AMR][1000 genomes]
rs371745	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3765058	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4142729	0.84[AMR][1000 genomes]
rs422854	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4643520	0.84[AMR][1000 genomes]
rs4670270	0.84[AMR][1000 genomes]
rs4670901	0.80[AMR][1000 genomes]
rs4670903	0.84[AMR][1000 genomes]
rs6544183	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6544184	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6544185	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6544187	0.84[AMR][1000 genomes]
rs6704656	0.80[AMR][1000 genomes]
rs6716101	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs672208	0.81[ASN][1000 genomes]
rs6752850	0.84[AMR][1000 genomes]
rs7573310	0.84[AMR][1000 genomes]
rs7577088	0.87[AMR][1000 genomes]
rs7594644	0.83[EUR][1000 genomes]
rs9679498	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873884	chr2:39154463-39332093	Genic enhancers Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	esv2755359	chr2:39169049-39417849	Strong transcription Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:39110200-39186800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr2:39150000-39186600	Weak transcription	Brain Anterior Caudate	brain
3	chr2:39150400-39184800	Weak transcription	Psoas Muscle	Psoas
4	chr2:39160400-39186600	Weak transcription	Pancreas	Pancrea
5	chr2:39163800-39183600	Weak transcription	Brain Hippocampus Middle	brain
6	chr2:39175000-39186600	Weak transcription	Ovary	ovary
7	chr2:39175000-39187000	Weak transcription	Brain Angular Gyrus	brain
8	chr2:39175200-39186800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr2:39176600-39186600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr2:39176800-39184200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr2:39181600-39184800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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