Variant report

Variant	rs2604560
Chromosome Location	chr4:15149657-15149658
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:15144687..15147664-chr4:15147713..15151473,4	K562	blood:
2	chr4:15147486..15149785-chr4:15152152..15154302,2	MCF-7	breast:
3	chr4:15145132..15146703-chr4:15148611..15151473,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs930830	0.89[ASW][hapmap];0.95[CEU][hapmap];0.85[GIH][hapmap];0.98[LWK][hapmap];0.96[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv829868	chr4:14964559-15164706	Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15134600-15150400	Weak transcription	Aorta	Aorta
2	chr4:15145800-15150000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr4:15146200-15151000	Weak transcription	Fetal Brain Male	brain
4	chr4:15146400-15150000	Weak transcription	Osteobl	bone
5	chr4:15146400-15150400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr4:15146600-15149800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:15146800-15152000	Enhancers	Fetal Heart	heart
8	chr4:15147400-15150400	Flanking Active TSS	Brain Anterior Caudate	brain
9	chr4:15147400-15152400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr4:15147800-15151000	Weak transcription	Psoas Muscle	Psoas
11	chr4:15148200-15151000	Weak transcription	Liver	Liver
12	chr4:15148400-15152000	Enhancers	Ovary	ovary
13	chr4:15148600-15149800	Enhancers	Brain Germinal Matrix	brain
14	chr4:15148600-15150000	Flanking Active TSS	Brain Cingulate Gyrus	brain
15	chr4:15148600-15150200	Flanking Active TSS	Brain Substantia Nigra	brain
16	chr4:15148600-15152400	Enhancers	Left Ventricle	heart
17	chr4:15148600-15152400	Enhancers	Right Ventricle	heart
18	chr4:15148800-15152200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr4:15148800-15152200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr4:15148800-15152200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr4:15148800-15153000	Enhancers	HepG2	liver
22	chr4:15149000-15149800	Weak transcription	Right Atrium	heart
23	chr4:15149000-15150000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr4:15149000-15152400	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr4:15149000-15152800	Enhancers	Brain Angular Gyrus	brain
26	chr4:15149200-15149800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
27	chr4:15149200-15152400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr4:15149200-15153000	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr4:15149400-15150200	Enhancers	Pancreas	Pancrea
30	chr4:15149400-15152400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr4:15149600-15150000	Flanking Active TSS	Brain Hippocampus Middle	brain

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