Variant report

Variant	rs2605616
Chromosome Location	chr11:93236432-93236433
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2605588	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv1039623	chr11:93141461-93328739	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	esv2760208	chr11:93172673-93266594	Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv522568	chr11:93231137-93239907	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv516461	chr11:93231476-93240847	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93207000-93239000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr11:93211000-93253400	Weak transcription	Primary T cells from cord blood	blood
3	chr11:93211600-93243800	Weak transcription	Fetal Thymus	thymus
4	chr11:93218600-93254400	Weak transcription	Hela-S3	cervix
5	chr11:93218800-93238200	Weak transcription	Esophagus	oesophagus
6	chr11:93218800-93245800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr11:93222400-93238000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr11:93223000-93242800	Weak transcription	Adipose Nuclei	Adipose
9	chr11:93225400-93242800	Weak transcription	GM12878-XiMat	blood
10	chr11:93225600-93248800	Weak transcription	Fetal Muscle Leg	muscle
11	chr11:93226400-93257400	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr11:93226600-93238000	Weak transcription	Fetal Lung	lung
13	chr11:93227000-93243800	Weak transcription	Lung	lung
14	chr11:93227200-93257600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr11:93227400-93239800	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr11:93228200-93243400	Weak transcription	Right Ventricle	heart
17	chr11:93228200-93248200	Weak transcription	Brain Hippocampus Middle	brain
18	chr11:93228400-93237800	Weak transcription	Osteobl	bone
19	chr11:93231000-93236600	Weak transcription	Dnd41	blood
20	chr11:93232200-93243200	Weak transcription	Spleen	Spleen
21	chr11:93232400-93237400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr11:93232400-93237800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr11:93232400-93238800	Weak transcription	Ovary	ovary
24	chr11:93232400-93245200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr11:93232800-93236600	Weak transcription	Fetal Stomach	stomach
26	chr11:93232800-93237800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr11:93232800-93243200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:93232800-93245800	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr11:93232800-93248800	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr11:93233000-93248800	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr11:93233000-93248800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr11:93233000-93257400	Weak transcription	Stomach Smooth Muscle	stomach
33	chr11:93233200-93241200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr11:93233400-93248600	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr11:93234000-93242600	Enhancers	Liver	Liver
36	chr11:93234200-93240800	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr11:93234400-93237400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr11:93234400-93243400	Weak transcription	Left Ventricle	heart
39	chr11:93234600-93239400	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chr11:93234800-93250400	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr11:93235200-93240200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr11:93235200-93250200	Weak transcription	Aorta	Aorta
43	chr11:93235400-93243400	Weak transcription	Pancreas	Pancrea
44	chr11:93235400-93257800	Weak transcription	Gastric	stomach
45	chr11:93235600-93258800	Weak transcription	Small Intestine	intestine
46	chr11:93235800-93236800	Weak transcription	Fetal Intestine Small	intestine
47	chr11:93235800-93240600	Weak transcription	HepG2	liver
48	chr11:93235800-93252600	Weak transcription	Duodenum Mucosa	Duodenum
49	chr11:93236200-93238600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr11:93236200-93243400	Weak transcription	Brain Cingulate Gyrus	brain

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