Variant report

Variant	rs2608943
Chromosome Location	chr6:131801523-131801524
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs12190468	0.81[ASN][1000 genomes]
rs12196690	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2249691	0.82[ASN][1000 genomes]
rs2249821	0.82[ASN][1000 genomes]
rs2250409	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2327152	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2446214	0.82[ASN][1000 genomes]
rs2446216	0.82[ASN][1000 genomes]
rs2446217	0.82[ASN][1000 genomes]
rs2491205	0.82[ASN][1000 genomes]
rs2491207	0.82[ASN][1000 genomes]
rs2608944	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2608945	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2608956	0.82[ASN][1000 genomes]
rs2608957	0.82[ASN][1000 genomes]
rs2608958	0.82[ASN][1000 genomes]
rs2608959	0.82[ASN][1000 genomes]
rs2608960	0.82[ASN][1000 genomes]
rs2608961	0.82[ASN][1000 genomes]
rs2608962	0.82[ASN][1000 genomes]
rs2608963	0.82[ASN][1000 genomes]
rs2608964	0.82[ASN][1000 genomes]
rs2608965	0.82[ASN][1000 genomes]
rs2608966	0.82[ASN][1000 genomes]
rs2781643	0.84[CHB][hapmap]
rs2781653	0.85[CHB][hapmap]
rs2807275	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2807276	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2807277	0.82[ASN][1000 genomes]
rs4294029	0.82[ASN][1000 genomes]
rs4565332	0.82[ASN][1000 genomes]
rs4566904	0.82[ASN][1000 genomes]
rs6569744	0.82[ASN][1000 genomes]
rs6569745	0.82[ASN][1000 genomes]
rs6569746	0.82[ASN][1000 genomes]
rs7743727	0.82[ASN][1000 genomes]
rs7744007	0.82[ASN][1000 genomes]
rs7744116	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	esv1839224	chr6:131703293-131834119	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2829868	chr6:131729859-131898208	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131799400-131811200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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