Variant report

Variant	rs260961
Chromosome Location	chr4:26633902-26633903
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1558722	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs260940	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2968715	0.82[AMR][1000 genomes]
rs73249834	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv966489	chr4:26600972-26641744	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv522423	chr4:26625185-26706342	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv878768	chr4:26625185-26766687	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv524115	chr4:26631178-26706342	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26606400-26656600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:26608800-26643600	Weak transcription	Fetal Heart	heart
3	chr4:26609600-26640000	Weak transcription	Left Ventricle	heart
4	chr4:26609600-26649400	Weak transcription	Psoas Muscle	Psoas
5	chr4:26611200-26639600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr4:26613200-26634400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr4:26613400-26639600	Weak transcription	Fetal Brain Female	brain
8	chr4:26613800-26634400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr4:26613800-26657200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr4:26614000-26638800	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr4:26614000-26640600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr4:26614200-26641400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr4:26615000-26642000	Weak transcription	Fetal Intestine Small	intestine
14	chr4:26615200-26634200	Weak transcription	Fetal Muscle Leg	muscle
15	chr4:26615400-26638800	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr4:26615600-26641800	Weak transcription	Brain Germinal Matrix	brain
17	chr4:26615600-26642000	Weak transcription	Aorta	Aorta
18	chr4:26615800-26635000	Weak transcription	Thymus	Thymus
19	chr4:26615800-26640200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr4:26616600-26639400	Weak transcription	Adipose Nuclei	Adipose
21	chr4:26616600-26641800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr4:26616600-26641800	Weak transcription	Primary B cells from peripheral blood	blood
23	chr4:26616600-26662600	Weak transcription	Stomach Smooth Muscle	stomach
24	chr4:26617200-26642200	Weak transcription	Brain Angular Gyrus	brain
25	chr4:26618000-26640400	Weak transcription	NH-A	brain
26	chr4:26618200-26634800	Weak transcription	Ovary	ovary
27	chr4:26618200-26638600	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr4:26618200-26639800	Weak transcription	Fetal Brain Male	brain
29	chr4:26618200-26640000	Weak transcription	Fetal Intestine Large	intestine
30	chr4:26618200-26657200	Weak transcription	Pancreas	Pancrea
31	chr4:26618400-26639200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr4:26618400-26642000	Weak transcription	Esophagus	oesophagus
33	chr4:26618600-26640000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr4:26619600-26639600	Weak transcription	HSMMtube	muscle
35	chr4:26619600-26645600	Weak transcription	Spleen	Spleen
36	chr4:26619800-26634600	Weak transcription	Fetal Lung	lung
37	chr4:26619800-26640000	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr4:26620000-26634400	Weak transcription	Primary T cells from cord blood	blood
39	chr4:26620200-26635600	Weak transcription	Liver	Liver
40	chr4:26620200-26642200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr4:26620400-26639400	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr4:26620600-26643800	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr4:26621200-26642200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr4:26621800-26639000	Weak transcription	Fetal Muscle Trunk	muscle
45	chr4:26622000-26640600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr4:26622000-26641000	Weak transcription	HMEC	breast
47	chr4:26622000-26642400	Weak transcription	Brain Cingulate Gyrus	brain
48	chr4:26622000-26643800	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr4:26622400-26639000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr4:26622400-26645600	Weak transcription	NHLF	lung

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