Variant report

Variant	rs2611108
Chromosome Location	chr11:34295924-34295925
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34295466..34297998-chr11:34348756..34350438,2	MCF-7	breast:
2	chr11:34286604..34290357-chr11:34293722..34296590,3	MCF-7	breast:
3	chr11:34295781..34298473-chr11:34301568..34303802,2	MCF-7	breast:
4	chr11:34294490..34298865-chr11:34377987..34381842,6	MCF-7	breast:
5	chr11:34295678..34297424-chr11:34350802..34352838,2	MCF-7	breast:
6	chr11:34295048..34297358-chr11:34352691..34354542,2	MCF-7	breast:
7	chr11:34295302..34298402-chr11:34377411..34380929,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166016	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11821411	0.87[EUR][1000 genomes]
rs2611115	0.86[AFR][1000 genomes]
rs2755165	0.86[AFR][1000 genomes]
rs2755166	0.86[AFR][1000 genomes]
rs2755167	0.86[AFR][1000 genomes]
rs35982959	0.87[EUR][1000 genomes]
rs61117445	0.87[EUR][1000 genomes]
rs61327783	0.87[EUR][1000 genomes]
rs73497312	0.87[EUR][1000 genomes]
rs7938990	0.87[EUR][1000 genomes]
rs7949237	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757435	chr11:34220504-34370236	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759816	chr11:34220504-34370236	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv818809	chr11:34239730-34354076	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv2753052	chr11:34247462-34358300	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv897205	chr11:34248229-34507213	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv897206	chr11:34253421-34337564	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
8	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34285400-34296400	Weak transcription	Gastric	stomach
2	chr11:34285400-34296400	Weak transcription	Right Ventricle	heart
3	chr11:34285600-34296000	Weak transcription	Fetal Heart	heart
4	chr11:34285600-34296200	Weak transcription	Stomach Mucosa	stomach
5	chr11:34285600-34299800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:34286800-34296200	Weak transcription	Psoas Muscle	Psoas
7	chr11:34289000-34296200	Weak transcription	Left Ventricle	heart
8	chr11:34289000-34296400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:34289000-34296400	Weak transcription	Colon Smooth Muscle	Colon
10	chr11:34289000-34302600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr11:34289200-34296200	Weak transcription	Fetal Stomach	stomach
12	chr11:34289200-34296200	Weak transcription	Stomach Smooth Muscle	stomach
13	chr11:34289200-34296400	Weak transcription	Fetal Brain Female	brain
14	chr11:34289400-34296000	Weak transcription	Fetal Brain Male	brain
15	chr11:34291400-34296400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr11:34291600-34296400	Weak transcription	Fetal Thymus	thymus
17	chr11:34291800-34296400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr11:34293000-34296600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr11:34293600-34299800	Weak transcription	HepG2	liver
20	chr11:34294200-34297600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr11:34294600-34297200	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr11:34294800-34297000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr11:34294800-34297400	Enhancers	Fetal Lung	lung
24	chr11:34294800-34297400	Enhancers	Fetal Muscle Leg	muscle
25	chr11:34294800-34299400	Enhancers	Placenta	Placenta
26	chr11:34295000-34297600	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr11:34295000-34297800	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr11:34295000-34298600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr11:34295200-34296200	Enhancers	Hela-S3	cervix
30	chr11:34295200-34296400	Weak transcription	Fetal Muscle Trunk	muscle
31	chr11:34295200-34296600	Weak transcription	Right Atrium	heart
32	chr11:34295200-34297800	Enhancers	Pancreas	Pancrea
33	chr11:34295400-34296200	Weak transcription	Fetal Kidney	kidney
34	chr11:34295600-34297000	Enhancers	Brain Hippocampus Middle	brain
35	chr11:34295800-34296200	Enhancers	Muscle Satellite Cultured Cells	--
36	chr11:34295800-34296200	Enhancers	NH-A	brain
37	chr11:34295800-34296600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr11:34295800-34296600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr11:34295800-34296600	Enhancers	NHEK	skin
40	chr11:34295800-34296600	Enhancers	NHLF	lung
41	chr11:34295800-34296800	Enhancers	Brain Cingulate Gyrus	brain
42	chr11:34295800-34296800	Enhancers	Brain Germinal Matrix	brain
43	chr11:34295800-34296800	Enhancers	HSMMtube	muscle
44	chr11:34295800-34297000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr11:34295800-34297000	Enhancers	Brain Anterior Caudate	brain
46	chr11:34295800-34297000	Enhancers	Brain Substantia Nigra	brain
47	chr11:34295800-34297000	Flanking Active TSS	A549	lung
48	chr11:34295800-34297200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr11:34295800-34297200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr11:34295800-34297200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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