Variant report

Variant	rs261233
Chromosome Location	chr5:95909410-95909411
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:95901536..95903744-chr5:95906929..95910055,4	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12520714	0.82[ASN][1000 genomes]
rs149449	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17086305	0.84[ASN][1000 genomes]
rs17086313	0.82[ASN][1000 genomes]
rs171869	0.86[CHB][hapmap]
rs2124885	0.82[ASN][1000 genomes]
rs2168627	0.81[ASN][1000 genomes]
rs2578697	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs261217	0.85[CHB][hapmap]
rs261218	0.85[CHB][hapmap]
rs261219	0.80[AMR][1000 genomes]
rs261220	0.85[CHB][hapmap];0.81[AMR][1000 genomes]
rs261221	0.85[CHB][hapmap];0.80[AMR][1000 genomes]
rs261222	0.80[AMR][1000 genomes]
rs261229	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs261230	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs261231	0.94[AFR][1000 genomes]
rs3853202	0.87[ASN][1000 genomes]
rs4869294	0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs56791881	0.82[ASN][1000 genomes]
rs66522472	0.81[ASN][1000 genomes]
rs6868440	0.87[ASN][1000 genomes]
rs72772007	0.82[ASN][1000 genomes]
rs73774308	0.80[ASN][1000 genomes]
rs7725567	0.86[CHB][hapmap]
rs8180398	0.80[ASN][1000 genomes]
rs8180437	0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs8180490	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1024964	chr5:95742124-96065492	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv537811	chr5:95742124-96065492	Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
5	nsv1026484	chr5:95759910-95961518	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv2534303	chr5:95908811-95910436	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95905400-95918200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:95906600-95909600	Enhancers	HUVEC	blood vessel
3	chr5:95908000-95910400	Enhancers	Hela-S3	cervix
4	chr5:95908200-95909600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:95908400-95909600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:95908400-95909600	Enhancers	Osteobl	bone
7	chr5:95908800-95917800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:95909000-95913600	Weak transcription	NHDF-Ad	bronchial
9	chr5:95909400-95913400	Weak transcription	NH-A	brain
10	chr5:95909400-95913600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr5:95909400-95914200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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