Variant report

Variant	rs2612339
Chromosome Location	chr18:39114110-39114111
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17712291	0.85[JPT][hapmap]
rs1942078	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2587615	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2587634	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2612342	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2612343	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2612344	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2612354	0.87[EUR][1000 genomes]
rs2703176	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2703183	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2848760	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2848761	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2848762	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2848766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2848767	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2848768	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909564	chr18:38739067-39179256	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1066869	chr18:38742896-39680723	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv543685	chr18:38742896-39680723	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:39113400-39114200	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr18:39113600-39114200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr18:39113600-39114200	Enhancers	H1 Cell Line	embryonic stem cell
4	chr18:39113800-39114200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr18:39113800-39114400	Enhancers	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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