Variant report

Variant	rs2613206
Chromosome Location	chr8:95250658-95250659
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10956909	0.83[CEU][hapmap]
rs16916666	1.00[CEU][hapmap];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17734840	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17735424	0.83[CEU][hapmap]
rs17797394	0.83[CEU][hapmap]
rs2170363	0.86[CEU][hapmap]
rs2607068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2607069	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2607071	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2607073	0.96[ASN][1000 genomes]
rs2607075	0.93[ASN][1000 genomes]
rs2623166	1.00[CEU][hapmap];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2623168	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2623169	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3179604	1.00[CEU][hapmap];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs930868	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs930870	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024907	chr8:95188944-95296378	Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv539677	chr8:95188944-95296378	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1024893	chr8:95189085-95293557	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1022489	chr8:95212660-95273564	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv539679	chr8:95212660-95273564	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1035036	chr8:95213244-95283014	Enhancers Active TSS Flanking Active TSS Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv831401	chr8:95218297-95393968	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95246000-95253200	Weak transcription	Fetal Brain Male	brain
2	chr8:95246800-95254000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr8:95247000-95254000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr8:95247200-95252200	Weak transcription	Duodenum Mucosa	Duodenum
5	chr8:95247200-95252200	Weak transcription	A549	lung
6	chr8:95247200-95252400	Weak transcription	NHLF	lung
7	chr8:95247200-95252600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr8:95247200-95253600	Weak transcription	Left Ventricle	heart
9	chr8:95247200-95253600	Weak transcription	Right Atrium	heart
10	chr8:95247200-95262400	Weak transcription	Gastric	stomach
11	chr8:95247400-95252000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr8:95247400-95252200	Weak transcription	Colon Smooth Muscle	Colon
13	chr8:95247400-95252200	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr8:95247400-95252200	Weak transcription	Fetal Heart	heart
15	chr8:95247400-95252200	Weak transcription	Fetal Intestine Small	intestine
16	chr8:95247400-95252400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr8:95247400-95252400	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr8:95247400-95252600	Weak transcription	Stomach Smooth Muscle	stomach
19	chr8:95247600-95253000	Weak transcription	Fetal Intestine Large	intestine
20	chr8:95247600-95253200	Weak transcription	HMEC	breast
21	chr8:95247800-95253200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr8:95247800-95256800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr8:95248200-95262200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr8:95248600-95252400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr8:95248800-95251600	Weak transcription	Fetal Thymus	thymus
26	chr8:95248800-95252200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr8:95250400-95259400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links