Variant report

Variant	rs2614509
Chromosome Location	chr14:25243139-25243140
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10220374	1.00[ASN][1000 genomes]
rs10782460	0.87[ASN][1000 genomes]
rs1101638	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11158905	0.87[ASN][1000 genomes]
rs12147401	0.87[ASN][1000 genomes]
rs1461638	1.00[ASN][1000 genomes]
rs1461639	1.00[ASN][1000 genomes]
rs1461640	1.00[ASN][1000 genomes]
rs1461648	1.00[ASN][1000 genomes]
rs17795514	0.98[ASN][1000 genomes]
rs35288201	1.00[ASN][1000 genomes]
rs4453391	0.99[ASN][1000 genomes]
rs4587894	1.00[ASN][1000 genomes]
rs6574011	0.99[ASN][1000 genomes]
rs7159380	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs854345	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs854419	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv901505	chr14:25237268-25360584	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25241000-25244000	Weak transcription	Fetal Heart	heart
2	chr14:25242600-25244600	Enhancers	HUVEC	blood vessel
3	chr14:25242800-25243200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr14:25242800-25245600	Enhancers	Fetal Lung	lung
5	chr14:25243000-25244200	Enhancers	Fetal Muscle Leg	muscle
6	chr14:25243000-25244800	Enhancers	Primary hematopoietic stem cells	blood
7	chr14:25243000-25244800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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