Variant report

Variant	rs2615750
Chromosome Location	chr11:108628527-108628528
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2615726	0.80[AFR][1000 genomes]
rs2615751	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs2726898	1.00[YRI][hapmap]
rs2726900	1.00[YRI][hapmap]
rs2726921	1.00[YRI][hapmap]
rs7126459	1.00[YRI][hapmap]
rs971234	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898388	chr11:108440814-108724639	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108605800-108663800	Weak transcription	K562	blood
2	chr11:108607600-108644600	Weak transcription	Aorta	Aorta
3	chr11:108612800-108630200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr11:108614600-108638600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr11:108615600-108657000	Weak transcription	Primary B cells from cord blood	blood
6	chr11:108622400-108629600	Weak transcription	Primary hematopoietic stem cells	blood
7	chr11:108623000-108628600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr11:108626000-108628600	Weak transcription	Ovary	ovary
9	chr11:108626000-108628600	Weak transcription	NH-A	brain
10	chr11:108626000-108628800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:108626000-108629600	Weak transcription	Colon Smooth Muscle	Colon
12	chr11:108626000-108632400	Weak transcription	Primary B cells from peripheral blood	blood
13	chr11:108626000-108635000	Weak transcription	Psoas Muscle	Psoas
14	chr11:108626200-108629400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr11:108626200-108629800	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr11:108626200-108641600	Weak transcription	HSMM	muscle
17	chr11:108626400-108629200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:108626400-108629200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr11:108626400-108629800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr11:108626800-108628800	Enhancers	HepG2	liver
21	chr11:108626800-108629600	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr11:108627000-108629200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr11:108627600-108628600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr11:108627600-108629200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr11:108627600-108629200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr11:108627600-108629200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr11:108627600-108629600	Enhancers	H1 Cell Line	embryonic stem cell
28	chr11:108627600-108629800	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr11:108627800-108628600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr11:108627800-108659400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr11:108628000-108629200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr11:108628200-108629400	Enhancers	Liver	Liver
33	chr11:108628400-108629000	Enhancers	Left Ventricle	heart
34	chr11:108628400-108629600	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr11:108628400-108629800	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr11:108628400-108629800	Enhancers	Adipose Nuclei	Adipose

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