Variant report

Variant	rs2616330
Chromosome Location	chr20:52906431-52906432
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:52903809..52908618-chr20:52965034..52968390,4	MCF-7	breast:
2	chr20:52769773..52772486-chr20:52904523..52906497,2	MCF-7	breast:
3	chr19:35738580..35741475-chr20:52904507..52907195,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000105699	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1293132	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1293137	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1293143	0.80[EUR][1000 genomes]
rs1293144	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1298513	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1343080	0.81[EUR][1000 genomes]
rs1382010	0.82[EUR][1000 genomes]
rs1382015	0.86[ASN][1000 genomes]
rs1418924	0.82[EUR][1000 genomes]
rs1477730	0.84[ASN][1000 genomes]
rs1542522	0.85[EUR][1000 genomes]
rs1542523	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2061721	0.82[ASN][1000 genomes]
rs2153964	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2153965	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2185849	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2616335	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2870320	0.84[EUR][1000 genomes]
rs292120	0.82[EUR][1000 genomes]
rs292123	0.82[EUR][1000 genomes]
rs292125	0.82[EUR][1000 genomes]
rs292126	0.82[EUR][1000 genomes]
rs292132	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs292139	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs292141	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs292143	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs292144	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs292146	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6013944	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6013960	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6023082	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6097895	0.83[EUR][1000 genomes]
rs6097896	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv834010	chr20:52759824-52932939	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv834011	chr20:52858341-53086042	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
4	nsv962638	chr20:52883415-52917517	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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