Variant report

Variant	rs2616613
Chromosome Location	chr10:28666005-28666006
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7083882	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	esv3314352	chr10:28662046-28666844	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3337700	chr10:28663096-28666094	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28659600-28667800	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr10:28659800-28667800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr10:28660000-28668200	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr10:28660400-28667600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr10:28664400-28666200	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr10:28664400-28666800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr10:28664800-28670600	Weak transcription	HSMM	muscle
8	chr10:28665000-28667600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr10:28665200-28667800	Weak transcription	NHEK	skin
10	chr10:28665200-28675600	Weak transcription	Hela-S3	cervix
11	chr10:28665400-28667800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr10:28665400-28667800	Weak transcription	Stomach Mucosa	stomach
13	chr10:28665600-28667600	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr10:28665800-28667400	Weak transcription	Lung	lung
15	chr10:28666000-28667400	Weak transcription	Placenta	Placenta
16	chr10:28666000-28667600	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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