Variant report

Variant	rs2617305
Chromosome Location	chr5:16279612-16279613
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1013018	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11133838	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11133839	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11133840	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11743167	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11750381	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11750406	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12652713	0.86[EUR][1000 genomes]
rs12654575	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13168554	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17611291	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2219770	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2967939	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs986768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16279000-16280400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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