Variant report

Variant	rs261777
Chromosome Location	chr6:120521680-120521681
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs155174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs155175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs155188	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs155190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs261761	0.86[AFR][1000 genomes]
rs261762	0.95[AFR][1000 genomes]
rs261764	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs261778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs261780	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs261781	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs261782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs367072	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753290	chr6:120309301-120979301	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	esv2752474	chr6:120309301-120982301	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv464033	chr6:120367185-120636298	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv604564	chr6:120367185-120636298	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv886575	chr6:120509191-120651554	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:120518800-120522000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:120521400-120523000	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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