Variant report

Variant	rs261898
Chromosome Location	chr12:32465360-32465361
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:31835084..31835691-chr12:32464822..32465710,2	MCF-7	breast:
2	chr12:32461768..32463542-chr12:32464006..32465889,2	MCF-7	breast:
3	chr12:32414725..32415274-chr12:32464881..32465588,2	MCF-7	breast:
4	chr12:32213222..32214189-chr12:32464699..32465690,4	MCF-7	breast:
5	chr12:32259422..32259994-chr12:32464784..32465376,2	MCF-7	breast:
6	chr12:32455258..32455874-chr12:32465064..32465668,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151746	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2266510	0.91[CEU][hapmap];0.94[EUR][1000 genomes]
rs2650127	0.88[EUR][1000 genomes]
rs2650128	1.00[CEU][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531960	chr12:32257285-32775277	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	esv2751096	chr12:32280340-32702784	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv558171	chr12:32287259-32559693	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv832366	chr12:32328559-32511360	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:32443800-32480400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr12:32449200-32480400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr12:32449600-32490200	Weak transcription	HSMMtube	muscle
4	chr12:32450400-32480200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr12:32455200-32480400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr12:32456400-32480400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr12:32457200-32494400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr12:32459200-32480200	Weak transcription	Primary B cells from cord blood	blood
9	chr12:32459200-32480800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr12:32459400-32480600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr12:32460400-32480600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr12:32460400-32514600	Weak transcription	HMEC	breast
13	chr12:32460600-32480600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr12:32460800-32480400	Weak transcription	Osteobl	bone
15	chr12:32461000-32480800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr12:32461200-32480200	Weak transcription	HSMM	muscle
17	chr12:32461400-32480000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr12:32461400-32480200	Weak transcription	NH-A	brain
19	chr12:32461600-32472000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr12:32461800-32480400	Weak transcription	Primary T cells from cord blood	blood
21	chr12:32463000-32480200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr12:32463200-32480200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr12:32463600-32466600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr12:32463600-32466600	Weak transcription	Ovary	ovary
25	chr12:32463800-32469400	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr12:32463800-32478400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr12:32464600-32465400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr12:32464800-32465400	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr12:32464800-32465400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr12:32464800-32465400	Enhancers	Adipose Nuclei	Adipose
31	chr12:32464800-32465600	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr12:32464800-32465600	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr12:32464800-32465600	Enhancers	A549	lung
34	chr12:32465000-32465400	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr12:32465000-32465400	Enhancers	Primary B cells from peripheral blood	blood
36	chr12:32465000-32465600	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr12:32465000-32465800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr12:32465200-32465400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr12:32465200-32465400	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr12:32465200-32465400	Enhancers	Fetal Intestine Small	intestine
41	chr12:32465200-32465400	Weak transcription	Hela-S3	cervix
42	chr12:32465200-32465400	Enhancers	HUVEC	blood vessel
43	chr12:32465200-32466800	Weak transcription	Primary hematopoietic stem cells	blood
44	chr12:32465200-32475400	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr12:32465200-32475600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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