Variant report

Variant	rs2619518
Chromosome Location	chr6:15658979-15658980
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15652481..15654857-chr6:15657741..15659899,3	K562	blood:
2	chr6:15655170..15659272-chr6:15659508..15662983,5	MCF-7	breast:
3	chr6:15628579..15630551-chr6:15656798..15659188,2	K562	blood:
4	chr6:15657500..15659223-chr6:15666722..15668599,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2769564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2755670	chr6:15624762-15736008	Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3414662	chr6:15655007-15660306	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15600000-15660400	Weak transcription	Hela-S3	cervix
2	chr6:15615200-15662200	Weak transcription	Gastric	stomach
3	chr6:15616800-15662000	Weak transcription	Placenta	Placenta
4	chr6:15616800-15662200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:15621800-15662200	Weak transcription	Pancreas	Pancrea
6	chr6:15623800-15662000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr6:15628600-15662000	Weak transcription	NHLF	lung
8	chr6:15629600-15661800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr6:15632200-15662000	Weak transcription	Duodenum Mucosa	Duodenum
10	chr6:15637200-15662000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:15638200-15662000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:15639400-15662200	Weak transcription	Left Ventricle	heart
13	chr6:15642000-15662000	Weak transcription	Brain Angular Gyrus	brain
14	chr6:15642200-15662200	Weak transcription	Aorta	Aorta
15	chr6:15642400-15661400	Weak transcription	Spleen	Spleen
16	chr6:15642600-15662200	Weak transcription	Esophagus	oesophagus
17	chr6:15642800-15662000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:15642800-15662000	Weak transcription	Lung	lung
19	chr6:15642800-15662000	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr6:15643000-15662000	Weak transcription	Fetal Stomach	stomach
21	chr6:15644400-15661800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr6:15644400-15662000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr6:15644800-15661800	Weak transcription	HepG2	liver
24	chr6:15644800-15662000	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr6:15644800-15662000	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr6:15645600-15661800	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr6:15646000-15662000	Weak transcription	NHDF-Ad	bronchial
28	chr6:15646200-15662000	Weak transcription	Fetal Muscle Trunk	muscle
29	chr6:15647800-15662000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr6:15648200-15662200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr6:15648600-15661000	Weak transcription	Fetal Intestine Large	intestine
32	chr6:15648600-15662000	Weak transcription	Fetal Lung	lung
33	chr6:15648800-15662000	Weak transcription	Fetal Brain Female	brain
34	chr6:15649400-15662000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr6:15649600-15662000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr6:15649800-15662000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr6:15649800-15662000	Weak transcription	Liver	Liver
38	chr6:15649800-15662000	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr6:15649800-15662200	Weak transcription	HSMM	muscle
40	chr6:15650400-15661800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr6:15650800-15662000	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr6:15651000-15659400	Weak transcription	Fetal Intestine Small	intestine
43	chr6:15651000-15662000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr6:15651200-15662000	Weak transcription	Adipose Nuclei	Adipose
45	chr6:15652000-15660800	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr6:15652000-15662000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr6:15654200-15662000	Weak transcription	Right Atrium	heart
48	chr6:15654400-15660800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr6:15654400-15662000	Weak transcription	Fetal Heart	heart
50	chr6:15654800-15660400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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