Variant report

Variant	rs2620886
Chromosome Location	chr10:49990488-49990489
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49990440..49992229-chr10:49996377..49998161,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2448542	1.00[AMR][1000 genomes]
rs2663036	0.92[YRI][hapmap];1.00[AMR][1000 genomes]
rs2683612	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2940706	0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49967600-50000000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
2	chr10:49967800-50006800	Strong transcription	Primary B cells from peripheral blood	blood
3	chr10:49979600-49990600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:49979800-49991000	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr10:49979800-49992400	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr10:49981200-49991000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr10:49981400-50007200	Strong transcription	Primary B cells from cord blood	blood
8	chr10:49982000-49992200	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr10:49982400-49991400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr10:49982400-50000800	Weak transcription	Fetal Thymus	thymus
11	chr10:49982600-50006800	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr10:49985600-49999800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr10:49988800-49997600	Weak transcription	Spleen	Spleen
14	chr10:49990000-49990800	Strong transcription	GM12878-XiMat	blood
15	chr10:49990200-49990600	Strong transcription	Primary hematopoietic stem cells	blood
16	chr10:49990200-49991400	Enhancers	Fetal Stomach	stomach
17	chr10:49990200-49992000	Enhancers	Fetal Lung	lung
18	chr10:49990400-49990600	Active TSS	Fetal Brain Male	brain
19	chr10:49990400-49990600	ZNF genes & repeats	Lung	lung
20	chr10:49990400-49990600	Enhancers	Right Atrium	heart
21	chr10:49990400-49990800	Enhancers	Aorta	Aorta
22	chr10:49990400-49991000	Enhancers	Left Ventricle	heart
23	chr10:49990400-49991000	Enhancers	Ovary	ovary

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