Variant report

Variant	rs2623177
Chromosome Location	chr8:95211170-95211171
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:95206766..95209394-chr8:95210564..95212309,3	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10504934	0.82[CHB][hapmap];0.83[ASN][1000 genomes]
rs10956904	0.82[CHB][hapmap];0.83[ASN][1000 genomes]
rs11786049	0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12056835	0.98[ASN][1000 genomes]
rs1817244	0.83[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs1971965	0.82[ASN][1000 genomes]
rs2005489	0.91[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2157	0.82[EUR][1000 genomes]
rs2445717	0.81[JPT][hapmap]
rs2613221	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2623165	0.82[ASN][1000 genomes]
rs34689002	0.81[ASN][1000 genomes]
rs3757995	0.82[CHB][hapmap];0.85[ASN][1000 genomes]
rs3886489	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4587298	0.83[ASN][1000 genomes]
rs4734271	0.83[ASN][1000 genomes]
rs55795711	0.83[ASN][1000 genomes]
rs56129387	0.83[ASN][1000 genomes]
rs59773910	0.83[ASN][1000 genomes]
rs60945589	0.83[ASN][1000 genomes]
rs62523262	0.83[ASN][1000 genomes]
rs62523265	0.82[ASN][1000 genomes]
rs6989467	0.82[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs874019	0.83[ASN][1000 genomes]
rs900051	0.82[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024907	chr8:95188944-95296378	Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv539677	chr8:95188944-95296378	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1022972	chr8:95189085-95245392	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1024893	chr8:95189085-95293557	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv518636	chr8:95196794-95233336	Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv539678	chr8:95197036-95225644	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1030292	chr8:95198982-95231692	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv522024	chr8:95199215-95232449	Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv1020665	chr8:95199302-95232062	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95206000-95211800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr8:95206400-95212000	Weak transcription	Small Intestine	intestine
3	chr8:95207400-95213400	Enhancers	Fetal Intestine Large	intestine
4	chr8:95208600-95212600	Enhancers	Stomach Mucosa	stomach
5	chr8:95209400-95211800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr8:95209800-95211800	Weak transcription	Colonic Mucosa	Colon
7	chr8:95209800-95211800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr8:95210200-95211200	Flanking Active TSS	A549	lung
9	chr8:95210800-95211200	Enhancers	Hela-S3	cervix
10	chr8:95210800-95211600	Enhancers	Fetal Intestine Small	intestine
11	chr8:95210800-95213000	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr8:95211000-95211200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
13	chr8:95211000-95211600	Weak transcription	Gastric	stomach
14	chr8:95211000-95212000	Weak transcription	HepG2	liver

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