Variant report

Variant	rs2625411
Chromosome Location	chr8:63163452-63163453
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2625409	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2625412	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2683777	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016883	chr8:63110741-63171354	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1019143	chr8:63142202-63390820	Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2757277	chr8:63156123-63260182	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv2759621	chr8:63156123-63260182	Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63159200-63163800	Active TSS	Fetal Brain Female	brain
2	chr8:63162600-63164600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr8:63162600-63164600	Weak transcription	NH-A	brain
4	chr8:63162600-63165600	Weak transcription	Psoas Muscle	Psoas
5	chr8:63162800-63164600	Weak transcription	HSMMtube	muscle
6	chr8:63162800-63164800	Weak transcription	A549	lung
7	chr8:63162800-63165000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:63163000-63164200	Enhancers	Fetal Brain Male	brain
9	chr8:63163000-63164400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:63163000-63164600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr8:63163000-63164600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr8:63163000-63164600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr8:63163000-63164600	Weak transcription	HSMM	muscle
14	chr8:63163000-63164800	Weak transcription	NHDF-Ad	bronchial
15	chr8:63163200-63164200	Weak transcription	Brain Germinal Matrix	brain
16	chr8:63163200-63190400	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr8:63163400-63164600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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