Variant report

Variant	rs2627304
Chromosome Location	chr15:74550032-74550033
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74543564..74546354-chr15:74548836..74550787,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2629734	0.85[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs351158	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs351171	0.82[YRI][hapmap]
rs395887	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs439668	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833053	chr15:74360156-74555140	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv833054	chr15:74457643-74625283	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74545000-74550600	Weak transcription	Fetal Heart	heart
2	chr15:74545800-74550800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr15:74546000-74550800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:74546000-74550800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:74546200-74550800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr15:74546200-74550800	Weak transcription	Brain Angular Gyrus	brain
7	chr15:74546200-74550800	Weak transcription	Spleen	Spleen
8	chr15:74546200-74551200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr15:74546200-74551200	Weak transcription	Fetal Brain Female	brain
10	chr15:74546200-74551600	Weak transcription	Brain Anterior Caudate	brain
11	chr15:74547000-74550800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr15:74547000-74550800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr15:74547600-74552600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr15:74548400-74551200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr15:74548600-74558000	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr15:74549000-74553000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:74549200-74556200	Enhancers	Brain Germinal Matrix	brain
18	chr15:74549400-74552800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
19	chr15:74549400-74553000	Enhancers	Fetal Muscle Leg	muscle
20	chr15:74549400-74557800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr15:74549600-74552800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
22	chr15:74549800-74550600	Strong transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr15:74550000-74557800	Enhancers	Fetal Brain Male	brain

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