Variant report

Variant	rs263170
Chromosome Location	chr6:142871562-142871563
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs146250	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs187811	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs263106	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs263117	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs263128	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs263136	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs263153	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs263173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs865141	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9390000	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1023426	chr6:142813845-142940262	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830827	chr6:142840734-143015005	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv520479	chr6:142869099-142908146	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142864400-142871800	Weak transcription	Fetal Muscle Leg	muscle
2	chr6:142864400-142872000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:142864400-142872000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:142864400-142872000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:142864400-142872200	Weak transcription	NHEK	skin
6	chr6:142866800-142871800	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr6:142867200-142871800	Weak transcription	Fetal Thymus	thymus
8	chr6:142869400-142872200	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr6:142869400-142872400	Enhancers	Primary T cells from cord blood	blood
10	chr6:142869400-142872800	Enhancers	Dnd41	blood
11	chr6:142869600-142873200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr6:142869800-142871800	Weak transcription	HMEC	breast
13	chr6:142870600-142871600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr6:142871000-142872200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr6:142871000-142872600	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr6:142871000-142873200	Enhancers	HSMMtube	muscle
17	chr6:142871400-142871600	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr6:142871400-142871800	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr6:142871400-142872600	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr6:142871400-142872800	Enhancers	H1 Cell Line	embryonic stem cell
21	chr6:142871400-142873000	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr6:142871400-142873200	Enhancers	Fetal Stomach	stomach
23	chr6:142871400-142873200	Enhancers	HSMM	muscle
24	chr6:142871400-142873400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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