Variant report

Variant	rs2631761
Chromosome Location	chr4:8498193-8498194
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:8495654..8498484-chr4:8534530..8537327,2	MCF-7	breast:
2	chr4:8498123..8500167-chr4:8506357..8507950,2	MCF-7	breast:
3	chr4:8493970..8498267-chr4:8498833..8501951,5	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2177327	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2386228	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2631725	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2631738	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2631749	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2631753	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2688220	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35470507	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4374609	0.82[ASN][1000 genomes]
rs871363	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878604	chr4:8315938-8618916	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1002680	chr4:8357163-8721214	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv829854	chr4:8402921-8506407	Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:8473600-8501400	Weak transcription	Brain Substantia Nigra	brain
2	chr4:8478000-8500200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr4:8479200-8501400	Weak transcription	Liver	Liver
4	chr4:8480200-8498400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr4:8480200-8501400	Weak transcription	Brain Hippocampus Middle	brain
6	chr4:8480600-8498200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr4:8481400-8501400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr4:8482200-8501400	Weak transcription	Primary T cells from cord blood	blood
9	chr4:8491000-8501400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr4:8491000-8505200	Weak transcription	Fetal Brain Female	brain
11	chr4:8492000-8498800	Weak transcription	Fetal Stomach	stomach
12	chr4:8492000-8499600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr4:8495800-8501400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr4:8496000-8499400	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr4:8496200-8501400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr4:8496400-8501200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr4:8496800-8498200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr4:8496800-8499400	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr4:8497000-8498400	Enhancers	Placenta	Placenta
20	chr4:8497000-8504200	Weak transcription	Right Atrium	heart
21	chr4:8497200-8498800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr4:8497600-8498400	Enhancers	Ovary	ovary
23	chr4:8497600-8501200	Weak transcription	Lung	lung
24	chr4:8497800-8498400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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