Variant report

Variant	rs2632110
Chromosome Location	chr15:34311885-34311886
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12437606	1.00[ASN][1000 genomes]
rs12443077	0.95[ASN][1000 genomes]
rs12903907	0.91[ASN][1000 genomes]
rs2279423	0.95[ASN][1000 genomes]
rs2632073	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2632077	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs483279	0.81[ASN][1000 genomes]
rs486230	0.81[ASN][1000 genomes]
rs488762	0.81[ASN][1000 genomes]
rs489619	0.81[ASN][1000 genomes]
rs489945	0.81[ASN][1000 genomes]
rs514472	0.81[ASN][1000 genomes]
rs519152	0.81[ASN][1000 genomes]
rs519210	0.81[ASN][1000 genomes]
rs520032	0.81[ASN][1000 genomes]
rs541098	0.80[ASN][1000 genomes]
rs568229	0.81[ASN][1000 genomes]
rs639860	0.81[ASN][1000 genomes]
rs640291	0.81[ASN][1000 genomes]
rs646339	0.81[ASN][1000 genomes]
rs647721	0.81[ASN][1000 genomes]
rs74007651	0.81[ASN][1000 genomes]
rs74007652	0.81[ASN][1000 genomes]
rs9672432	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv903985	chr15:34279319-34370487	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34292000-34315000	Weak transcription	Aorta	Aorta
2	chr15:34294800-34315600	Weak transcription	Left Ventricle	heart
3	chr15:34304200-34319800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr15:34305000-34314000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr15:34306600-34314400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr15:34308200-34312400	Weak transcription	HSMMtube	muscle
7	chr15:34309000-34317400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr15:34309200-34314200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr15:34309400-34316000	Weak transcription	Brain Angular Gyrus	brain
10	chr15:34309400-34330000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:34309600-34312200	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr15:34309600-34330000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr15:34310000-34312200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr15:34310600-34315800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr15:34310800-34312600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr15:34310800-34315800	Weak transcription	Fetal Stomach	stomach
17	chr15:34311000-34318600	Weak transcription	Primary T cells from cord blood	blood
18	chr15:34311200-34315000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr15:34311200-34315800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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