Variant report

Variant	rs2632146
Chromosome Location	chr5:113404764-113404765
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1843794	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2087153	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2632144	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2632145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2632154	1.00[AMR][1000 genomes]
rs2721308	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2721316	1.00[AMR][1000 genomes]
rs901577	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471042	chr5:113160490-113440892	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113399000-113406200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:113399200-113405600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:113404400-113408800	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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