Variant report

Variant	rs2636692
Chromosome Location	chr4:106365320-106365321
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106365210..106367953-chr4:106377715..106379530,2	MCF-7	breast:
2	chr4:106362358..106365940-chr4:106392957..106394904,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138777	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12498981	0.92[ASN][1000 genomes]
rs12644313	0.96[ASN][1000 genomes]
rs2636697	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2636719	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2636736	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2636740	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2726452	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2726505	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461609	chr4:105869548-106366209	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv470063	chr4:105869548-106366209	Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv595007	chr4:105869548-106366209	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
5	nsv830027	chr4:106222010-106406738	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	nsv1002228	chr4:106346206-106433381	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	esv2760858	chr4:106351454-106376197	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106321400-106367200	Weak transcription	HUVEC	blood vessel
2	chr4:106323600-106372800	Weak transcription	Stomach Mucosa	stomach
3	chr4:106327200-106389200	Weak transcription	Small Intestine	intestine
4	chr4:106327200-106390600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr4:106336800-106376400	Weak transcription	Right Ventricle	heart
6	chr4:106336800-106387800	Weak transcription	NHLF	lung
7	chr4:106340200-106387800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr4:106341600-106376000	Weak transcription	Fetal Heart	heart
9	chr4:106346600-106369000	Weak transcription	Hela-S3	cervix
10	chr4:106347200-106366000	Weak transcription	NHDF-Ad	bronchial
11	chr4:106347600-106367600	Weak transcription	Fetal Brain Male	brain
12	chr4:106347600-106392800	Weak transcription	Colonic Mucosa	Colon
13	chr4:106347800-106375200	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr4:106348000-106366000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:106348000-106375000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr4:106348000-106376400	Weak transcription	Gastric	stomach
17	chr4:106348000-106376800	Weak transcription	Pancreas	Pancrea
18	chr4:106348000-106388000	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr4:106348200-106387800	Weak transcription	Lung	lung
20	chr4:106348200-106393000	Weak transcription	Thymus	Thymus
21	chr4:106348400-106384200	Weak transcription	Fetal Stomach	stomach
22	chr4:106348600-106384600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr4:106348800-106375000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr4:106352200-106375000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr4:106355400-106378800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr4:106355400-106393200	Weak transcription	Esophagus	oesophagus
27	chr4:106356800-106372600	Weak transcription	NH-A	brain
28	chr4:106357000-106372800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr4:106357200-106374200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr4:106357200-106381000	Weak transcription	Brain Cingulate Gyrus	brain
31	chr4:106357200-106381000	Weak transcription	Brain Substantia Nigra	brain
32	chr4:106357200-106387600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr4:106357200-106392600	Weak transcription	Brain Angular Gyrus	brain
34	chr4:106357600-106392200	Weak transcription	Rectal Smooth Muscle	rectum
35	chr4:106357800-106371400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr4:106358000-106369200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr4:106358200-106369600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
38	chr4:106358400-106367400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr4:106358600-106370200	Weak transcription	K562	blood
40	chr4:106358800-106372600	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr4:106359000-106373000	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr4:106359000-106378800	Weak transcription	Fetal Intestine Small	intestine
43	chr4:106359000-106382400	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr4:106359000-106387600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr4:106359200-106382200	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr4:106359400-106365400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr4:106359600-106366400	Weak transcription	HMEC	breast
48	chr4:106359600-106379800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr4:106359800-106367200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr4:106360000-106373400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links