Variant report
| Variant | rs2639236 |
|---|---|
| Chromosome Location | chr3:81067312-81067313 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs12714516 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs1347795 | 0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1438566 | 0.88[ASN][1000 genomes] |
| rs1438568 | 0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2250739 | 0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2255129 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2578293 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2578295 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2578299 | 0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2578302 | 0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2578303 | 0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2578304 | 0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2578305 | 0.83[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2578312 | 0.85[ASN][1000 genomes] |
| rs2639212 | 0.81[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2639213 | 0.81[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2639219 | 0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2639221 | 0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2639238 | 0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2639244 | 0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2639254 | 0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2639255 | 0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2639259 | 0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2639261 | 0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6808169 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv527598 | chr3:80585455-81250663 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv1009689 | chr3:80856608-81141322 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv536602 | chr3:80856608-81141322 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv1004043 | chr3:80990868-81172472 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv877040 | chr3:81027695-81113949 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:81052600-81077800 | Weak transcription | Liver | Liver |
