Variant report

Variant	rs2639606
Chromosome Location	chr9:71028127-71028128
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs263795	0.93[ASW][hapmap];0.94[JPT][hapmap];0.88[YRI][hapmap]
rs265100	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs265107	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs265110	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3004604	0.90[EUR][1000 genomes]
rs3118931	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs432940	0.94[YRI][hapmap];0.82[AFR][1000 genomes]
rs453521	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs598148	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs649182	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7023556	0.89[ASN][1000 genomes]
rs7033627	0.89[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427847	chr9:70318730-71153527	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:70982400-71031200	Weak transcription	Fetal Lung	lung
2	chr9:70987800-71031800	Weak transcription	Fetal Stomach	stomach
3	chr9:70997800-71052600	Weak transcription	HSMMtube	muscle
4	chr9:70999000-71031800	Weak transcription	Colon Smooth Muscle	Colon
5	chr9:71007000-71031000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:71007600-71032000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr9:71019600-71032000	Weak transcription	Left Ventricle	heart
8	chr9:71020200-71032000	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr9:71023200-71031800	Weak transcription	Stomach Smooth Muscle	stomach
10	chr9:71027600-71031000	Weak transcription	Fetal Heart	heart
11	chr9:71027600-71033000	Weak transcription	Psoas Muscle	Psoas
12	chr9:71027600-71041800	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr9:71028000-71031000	Weak transcription	Rectal Smooth Muscle	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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