Variant report

Variant	rs2640735
Chromosome Location	chr11:108459760-108459761
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:108459675..108461539-chr11:108462920..108467319,4	K562	blood:
2	chr11:108456301..108459825-chr11:108462869..108466112,5	MCF-7	breast:
3	chr11:108452987..108455068-chr11:108459027..108461050,2	K562	blood:

Variant related genes	Relation type
ENSG00000110723	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11212724	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11212725	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11212730	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11212731	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11212732	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17108340	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1893067	0.89[EUR][1000 genomes]
rs1893068	0.89[EUR][1000 genomes]
rs1976024	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2640737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2640739	0.91[EUR][1000 genomes]
rs2640740	0.80[EUR][1000 genomes]
rs2846408	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2846422	0.91[EUR][1000 genomes]
rs4429026	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4754330	0.92[EUR][1000 genomes]
rs56874150	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59663756	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59678619	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59702207	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9666351	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898387	chr11:108440814-108535792	Flanking Active TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv898388	chr11:108440814-108724639	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv832264	chr11:108449613-108623720	ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108434600-108462400	Weak transcription	Gastric	stomach
2	chr11:108443800-108459800	Weak transcription	Placenta	Placenta
3	chr11:108443800-108461600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:108453600-108462400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:108456400-108462800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:108457800-108462800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:108458200-108461200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr11:108458200-108462600	Weak transcription	Stomach Mucosa	stomach
9	chr11:108458200-108463400	Weak transcription	Colonic Mucosa	Colon
10	chr11:108458400-108462600	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr11:108459000-108460600	Enhancers	K562	blood
12	chr11:108459200-108459800	Enhancers	NHEK	skin
13	chr11:108459200-108460200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr11:108459600-108459800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr11:108459600-108460000	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr11:108459600-108460200	Enhancers	Placenta Amnion	Placenta Amnion
17	chr11:108459600-108460400	Enhancers	GM12878-XiMat	blood
18	chr11:108459600-108461600	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr11:108459600-108462400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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