Variant report

Variant	rs2641551
Chromosome Location	chr12:63210775-63210776
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:63209177..63211572-chr12:63327564..63329364,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111110	Chromatin interaction

rs_ID	r²[population]
rs2641549	1.00[EUR][1000 genomes]
rs2641550	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63187800-63211400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr12:63192800-63211400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr12:63195600-63211400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr12:63195600-63211400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr12:63195800-63228600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr12:63196000-63213600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr12:63196000-63213800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr12:63196000-63225800	Weak transcription	Gastric	stomach
9	chr12:63196400-63213600	Weak transcription	Fetal Intestine Small	intestine
10	chr12:63205800-63211400	Weak transcription	K562	blood
11	chr12:63207200-63211000	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr12:63207200-63211200	Weak transcription	Brain Angular Gyrus	brain
13	chr12:63207200-63211400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr12:63207200-63211400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr12:63207200-63211400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr12:63207200-63211400	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr12:63207200-63211400	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr12:63207200-63211400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr12:63207200-63211400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr12:63207200-63211400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr12:63207200-63211400	Weak transcription	Aorta	Aorta
22	chr12:63207200-63211400	Weak transcription	Duodenum Mucosa	Duodenum
23	chr12:63207200-63211400	Weak transcription	Ovary	ovary
24	chr12:63207200-63211400	Weak transcription	Psoas Muscle	Psoas
25	chr12:63207200-63211600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr12:63207200-63211600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr12:63207200-63211600	Weak transcription	Thymus	Thymus
28	chr12:63207200-63221000	Weak transcription	HepG2	liver
29	chr12:63207200-63228600	Weak transcription	A549	lung
30	chr12:63207200-63231200	Weak transcription	Pancreas	Pancrea
31	chr12:63207400-63211200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr12:63207400-63219400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr12:63207600-63211200	Weak transcription	Brain Hippocampus Middle	brain
34	chr12:63207600-63211400	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr12:63207600-63211400	Weak transcription	Brain Anterior Caudate	brain
36	chr12:63207600-63211400	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr12:63207600-63211400	Weak transcription	Brain Substantia Nigra	brain
38	chr12:63208400-63211400	Weak transcription	Dnd41	blood
39	chr12:63210000-63212600	Enhancers	Primary hematopoietic stem cells	blood
40	chr12:63210200-63210800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr12:63210200-63210800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr12:63210600-63210800	Enhancers	Primary hematopoietic stem cells short term culture	blood
43	chr12:63210600-63210800	Enhancers	Fetal Kidney	kidney
44	chr12:63210600-63211200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr12:63210600-63211400	Enhancers	Osteobl	bone

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