Variant report

Variant	rs2642105
Chromosome Location	chr14:46959926-46959927
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10130988	1.00[ASN][1000 genomes]
rs10131871	0.93[ASN][1000 genomes]
rs10135740	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10140977	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10151988	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10220566	1.00[ASN][1000 genomes]
rs11846013	0.93[ASN][1000 genomes]
rs1353190	1.00[ASN][1000 genomes]
rs1389607	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1389608	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1494095	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1494096	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1494097	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1669808	1.00[ASN][1000 genomes]
rs1761025	0.93[ASN][1000 genomes]
rs1761026	0.93[ASN][1000 genomes]
rs1761027	0.93[ASN][1000 genomes]
rs17740937	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1869100	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1869101	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1869102	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1901507	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1955262	0.93[ASN][1000 genomes]
rs2084823	0.93[ASN][1000 genomes]
rs2100337	0.93[ASN][1000 genomes]
rs2123129	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2123130	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2201359	0.93[ASN][1000 genomes]
rs2415997	0.93[ASN][1000 genomes]
rs2415998	0.93[ASN][1000 genomes]
rs2415999	0.93[ASN][1000 genomes]
rs2600812	0.88[ASN][1000 genomes]
rs2600816	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2642090	1.00[ASN][1000 genomes]
rs2642102	1.00[ASN][1000 genomes]
rs2642104	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2642106	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2817545	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2817547	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2817548	1.00[ASN][1000 genomes]
rs2817550	0.93[ASN][1000 genomes]
rs2817555	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2817556	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2817569	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28406485	0.93[ASN][1000 genomes]
rs28636061	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4595715	0.93[ASN][1000 genomes]
rs61993294	0.93[ASN][1000 genomes]
rs61993295	0.93[ASN][1000 genomes]
rs61993301	1.00[ASN][1000 genomes]
rs61993302	1.00[ASN][1000 genomes]
rs61993303	1.00[ASN][1000 genomes]
rs61993305	1.00[ASN][1000 genomes]
rs61993306	1.00[ASN][1000 genomes]
rs61993307	1.00[ASN][1000 genomes]
rs61993337	0.82[ASN][1000 genomes]
rs61993338	1.00[ASN][1000 genomes]
rs61993339	1.00[ASN][1000 genomes]
rs7150318	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7150632	1.00[ASN][1000 genomes]
rs7153780	0.90[ASN][1000 genomes]
rs7156444	0.93[ASN][1000 genomes]
rs7156466	0.93[ASN][1000 genomes]
rs72672853	0.93[ASN][1000 genomes]
rs754961	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs754962	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs8010773	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs8015548	0.80[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761411	chr14:46716963-46996307	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2751278	chr14:46718250-47225891	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1044526	chr14:46727837-46975636	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv542084	chr14:46727837-46975636	Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv901862	chr14:46797353-47083005	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv901863	chr14:46797353-47247399	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv2829996	chr14:46799990-47344432	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv901870	chr14:46825242-47125523	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv901871	chr14:46869797-46961322	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv564753	chr14:46869797-47006889	Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1037823	chr14:46873171-47013125	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv1040847	chr14:46905206-47869359	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	nsv542085	chr14:46905206-47869359	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
14	nsv542086	chr14:46905406-47662394	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
15	nsv1049865	chr14:46905406-47869220	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
16	nsv542087	chr14:46905406-47869220	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
17	nsv1040105	chr14:46921938-46998158	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv901872	chr14:46933384-47006889	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv1051025	chr14:46935174-46996307	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:46959200-46960000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr14:46959400-46960000	Active TSS	Primary hematopoietic stem cells	blood
3	chr14:46959400-46960000	Active TSS	Fetal Intestine Small	intestine
4	chr14:46959600-46960000	Enhancers	Liver	Liver
5	chr14:46959600-46960000	Active TSS	Fetal Intestine Large	intestine
6	chr14:46959800-46960200	Enhancers	GM12878-XiMat	blood

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