Variant report

Variant	rs2645128
Chromosome Location	chr6:37975747-37975748
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37974723..37976308-chr6:37979935..37981504,2	MCF-7	breast:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10456097	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1187422	0.84[ASN][1000 genomes]
rs1187423	0.84[ASN][1000 genomes]
rs12192182	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12194823	0.84[EUR][1000 genomes]
rs12198907	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12200258	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12204352	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12206818	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12211248	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12211981	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12213151	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12213835	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13210701	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13214465	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13220131	0.95[EUR][1000 genomes]
rs16890344	0.83[EUR][1000 genomes]
rs171831	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1812599	0.83[EUR][1000 genomes]
rs2132597	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs259673	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs259684	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs259686	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs259689	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs259690	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs259691	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs259695	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs259713	0.84[ASN][1000 genomes]
rs259715	0.84[ASN][1000 genomes]
rs259716	0.80[ASN][1000 genomes]
rs2645102	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2645107	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2645113	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2645116	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2645120	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2645127	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2645131	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2645134	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2645137	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2842500	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2842517	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2842527	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2842529	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34871463	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35823566	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56098839	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56140804	0.80[AFR][1000 genomes]
rs7747130	0.84[EUR][1000 genomes]
rs9647619	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs966705	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1017051	chr6:37789341-38084719	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv538203	chr6:37789341-38084719	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1018711	chr6:37813397-37981590	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1020625	chr6:37833591-38155622	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
8	nsv602956	chr6:37909084-37986489	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv2753764	chr6:37963308-37978172	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv34450	chr6:37963308-38007241	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37956200-37978800	Weak transcription	Primary T cells from cord blood	blood
2	chr6:37957800-37976400	Weak transcription	Aorta	Aorta
3	chr6:37960800-37982400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr6:37962200-37975800	Weak transcription	Liver	Liver
5	chr6:37963000-37975800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr6:37963000-37977600	Weak transcription	Ovary	ovary
7	chr6:37963000-37984800	Weak transcription	Right Atrium	heart
8	chr6:37963000-37995600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:37965600-37982200	Weak transcription	Psoas Muscle	Psoas
10	chr6:37965800-37979000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr6:37967600-37977600	Weak transcription	Primary B cells from cord blood	blood
12	chr6:37969200-37987800	Weak transcription	Fetal Kidney	kidney
13	chr6:37969400-37976400	Weak transcription	Colon Smooth Muscle	Colon
14	chr6:37969400-37977600	Weak transcription	Fetal Intestine Small	intestine
15	chr6:37970800-37984200	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr6:37971000-37976200	Weak transcription	HepG2	liver
17	chr6:37971200-37975800	Weak transcription	Fetal Heart	heart
18	chr6:37972200-37976000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr6:37972400-37983800	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr6:37972800-37976400	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr6:37973800-37977600	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr6:37974000-37976200	Weak transcription	Fetal Lung	lung
23	chr6:37974000-37977000	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr6:37974400-37977000	Weak transcription	Fetal Stomach	stomach
25	chr6:37974800-37984600	Weak transcription	Placenta	Placenta
26	chr6:37975600-37975800	Enhancers	Left Ventricle	heart
27	chr6:37975600-37976600	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr6:37975600-37976600	Enhancers	Skeletal Muscle Female	skeletal muscle

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