Variant report

Variant	rs2646936
Chromosome Location	chr6:37474575-37474576
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37454885..37456493-chr6:37473067..37475104,2	K562	blood:
2	chr6:37470444..37471961-chr6:37472743..37474694,2	K562	blood:
3	chr6:37465129..37468666-chr6:37470017..37474659,10	K562	blood:

Variant related genes	Relation type
ENSG00000198937	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1150792	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2776918	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1016310	chr6:37473075-37528469	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	esv3345484	chr6:37474399-37476947	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2646936	RP1-153P14.8	cis	Whole Blood	GTEx
rs2646936	RP1-153P14.5	cis	Whole Blood	GTEx

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37468000-37475800	Enhancers	Thymus	Thymus
2	chr6:37468000-37477200	Enhancers	Primary T cells fromperipheralblood	blood
3	chr6:37468000-37483600	Enhancers	Fetal Thymus	thymus
4	chr6:37468200-37476000	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr6:37468400-37475000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:37470600-37477000	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr6:37471000-37474600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:37471000-37475800	Enhancers	Primary T cells from cord blood	blood
9	chr6:37471000-37476000	Weak transcription	Duodenum Mucosa	Duodenum
10	chr6:37471200-37476000	Weak transcription	Dnd41	blood
11	chr6:37471200-37477800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr6:37471200-37483600	Weak transcription	Spleen	Spleen
13	chr6:37471400-37475800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr6:37471800-37476000	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr6:37472000-37475000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr6:37472000-37476000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr6:37472200-37475800	Weak transcription	GM12878-XiMat	blood
18	chr6:37472400-37476000	Weak transcription	Fetal Kidney	kidney
19	chr6:37472800-37475800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr6:37472800-37476000	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr6:37473600-37474600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr6:37473800-37475400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr6:37473800-37482200	Weak transcription	Primary hematopoietic stem cells	blood
24	chr6:37474200-37474600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr6:37474400-37474800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr6:37474400-37477000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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