Variant report

Variant	rs2647928
Chromosome Location	chr3:159747815-159747816
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:159747669..159749362-chr3:159751733..159753649,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs11708713	0.89[EUR][1000 genomes]
rs11716424	0.89[EUR][1000 genomes]
rs11716451	0.89[EUR][1000 genomes]
rs1651081	0.89[EUR][1000 genomes]
rs1874886	0.89[EUR][1000 genomes]
rs2366643	0.89[EUR][1000 genomes]
rs2366644	0.87[EUR][1000 genomes]
rs2647930	0.89[EUR][1000 genomes]
rs2647931	0.89[EUR][1000 genomes]
rs2914116	0.89[EUR][1000 genomes]
rs2936302	0.88[EUR][1000 genomes]
rs2936303	0.89[EUR][1000 genomes]
rs4580600	0.87[EUR][1000 genomes]
rs4679867	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4680536	0.81[EUR][1000 genomes]
rs4680538	0.87[EUR][1000 genomes]
rs480134	0.88[EUR][1000 genomes]
rs480913	0.89[EUR][1000 genomes]
rs483714	0.89[EUR][1000 genomes]
rs484600	0.89[EUR][1000 genomes]
rs485499	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs485789	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs491966	0.89[EUR][1000 genomes]
rs522127	0.89[EUR][1000 genomes]
rs523886	0.89[EUR][1000 genomes]
rs526734	0.85[EUR][1000 genomes]
rs545143	0.89[EUR][1000 genomes]
rs545232	0.89[EUR][1000 genomes]
rs547875	0.89[EUR][1000 genomes]
rs548018	0.89[EUR][1000 genomes]
rs564799	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs564976	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs571099	0.89[EUR][1000 genomes]
rs574808	0.89[EUR][1000 genomes]
rs579079	0.90[EUR][1000 genomes]
rs586094	0.88[EUR][1000 genomes]
rs587422	0.89[EUR][1000 genomes]
rs588998	0.89[EUR][1000 genomes]
rs589446	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs589545	0.89[EUR][1000 genomes]
rs600519	0.89[EUR][1000 genomes]
rs62270441	0.89[EUR][1000 genomes]
rs629209	0.89[EUR][1000 genomes]
rs6441289	0.89[EUR][1000 genomes]
rs6441290	0.89[EUR][1000 genomes]
rs669003	0.89[EUR][1000 genomes]
rs6771363	0.89[EUR][1000 genomes]
rs6808498	0.89[EUR][1000 genomes]
rs6808518	0.89[EUR][1000 genomes]
rs7640862	0.87[EUR][1000 genomes]
rs9290051	0.87[EUR][1000 genomes]
rs9845010	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829769	chr3:159606913-159805282	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159744000-159756200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:159745600-159750000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:159746000-159750000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:159746400-159749600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr3:159746400-159750200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:159746400-159750200	Weak transcription	NHLF	lung
7	chr3:159747000-159756600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr3:159747200-159750000	Weak transcription	GM12878-XiMat	blood
9	chr3:159747800-159749400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr3:159747800-159749400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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